PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_187760_muof.t1

Common Name

SOVF_187760

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

bZIP

Protein Properties

Length: 378aa MW: 40965.3 Da PI: 6.1914

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_187760_muof.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.3	4.4e-10	182	240	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l ++ l se+ Sp_187760_muof.t1 182 KRAKRILANRQSAARSKERKARYILELERKVQTLQTEATTLSAQLTLYQRDTTGLSSEN 240 9*****************************************99999888777776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.5E-16	178	242	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.53	180	243	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.5E-7	180	236	No hit	No description
SuperFamily	SSF57959	3.46E-10	182	233	No hit	No description
Pfam	PF00170	4.2E-9	182	240	IPR004827	Basic-leucine zipper domain
CDD	cd14703	9.18E-26	183	232	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MAMKPDPSTS NPNPDINGNP TKPLSAIPIS NGIGIGNGNA NSTLFGNPTP NPFRGPHHRR 60 AHSEVSFRIH DDMDLSSDPF TGSSTEEIGS EDDLFTTYID VDKLGAASGS ASHPSDDFAT 120 ASADGANVGL GLAVDGGDGG RPRHRYSNSV DATSSASFGE IMDAKKAMPP DKLAELWTID 180 PKRAKRILAN RQSAARSKER KARYILELER KVQTLQTEAT TLSAQLTLYQ RDTTGLSSEN 240 TELKLRLQAM EQQAQLRDAL NEALKQEVER LRMATGEMMG PSESFNLGMP SMQYNHSAFY 300 SLPPQHVSQG QHNMQMPQFH QSQGNMHHMH SSNPQNPSEF MPNDPLGRLQ GLDISSRGAP 360 TVKSEGASMS ASESSSTF

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MAMKPDPSTS NPNPDINGNP TKPLSAIPIS NGIGIGNGNA NSTLFGNPTP NPFRGPHHRR  60
AHSEVSFRIH DDMDLSSDPF TGSSTEEIGS EDDLFTTYID VDKLGAASGS ASHPSDDFAT  120
ASADGANVGL GLAVDGGDGG RPRHRYSNSV DATSSASFGE IMDAKKAMPP DKLAELWTID  180
PKRAKRILAN RQSAARSKER KARYILELER KVQTLQTEAT TLSAQLTLYQ RDTTGLSSEN  240
TELKLRLQAM EQQAQLRDAL NEALKQEVER LRMATGEMMG PSESFNLGMP SMQYNHSAFY  300
SLPPQHVSQG QHNMQMPQFH QSQGNMHHMH SSNPQNPSEF MPNDPLGRLQ GLDISSRGAP  360
TVKSEGASMS ASESSSTF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021858195.1	0.0	transcription factor RF2b-like isoform X2
Swissprot	O22873	1e-109	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A0K9QEM3	0.0	A0A0K9QEM3_SPIOL; Uncharacterized protein
STRING	XP_010685977.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-107	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]