PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_186950_uzmo.t1 | ||||||||
Common Name | SOVF_186950 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | NAC | ||||||||
Protein Properties | Length: 352aa MW: 39593.1 Da PI: 8.8752 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169 | 1.5e-52 | 15 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeel+v+yLk+k+++ +l++ ++i+evd+yk++Pw+Lp+k+ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++ Sp_186950_uzmo.t1 15 LPPGFRFHPTDEELIVHYLKRKASSVPLPV-SIIAEVDLYKFDPWELPSKAIFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPI 105 79****************************.89***************7777799************************************* PP NAM 93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 l++ ++++vg+kk Lvfy g+ p+g ktdW+mheyr+ Sp_186950_uzmo.t1 106 LTSngSNQKVGVKKALVFYGGKPPRGIKTDWIMHEYRV 143 *99777788***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.22E-63 | 7 | 179 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.007 | 15 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-27 | 16 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MESTDSSSTQ PYPQLPPGFR FHPTDEELIV HYLKRKASSV PLPVSIIAEV DLYKFDPWEL 60 PSKAIFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPILTSNG SNQKVGVKKA 120 LVFYGGKPPR GIKTDWIMHE YRVIDANSTS KLPHSLVDHP SKKPSLRLDD WVLCRIYKKN 180 NTQRPIEHDR DDLIEEMIKQ QKLMRTICSK NTNLMDHNNN NEQNLYEFSQ LGTSTSRHEM 240 YGIQGNDNNK REQQQQLQQQ QGSLYYDDPM GSVGSSSGRR FHHQQSDQTT GSTTGTDGNS 300 SSFVSMLSNL PQGITSTSSG VPFSMGSPLL VGNIGDGVLR PPFQLSGGTW NS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-74 | 15 | 181 | 15 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00058 | PBM | Transfer from AT1G61110 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021850756.1 | 0.0 | NAC transcription factor 25-like | ||||
Swissprot | Q8GY42 | 1e-106 | NAC25_ARATH; NAC transcription factor 25 | ||||
TrEMBL | A0A0K9QEW3 | 0.0 | A0A0K9QEW3_SPIOL; Uncharacterized protein | ||||
STRING | XP_010686575.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 1e-104 | NAC domain containing protein 25 |