PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_185410_gqhm.t1
Common NameSOVF_185410
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WOX
Protein Properties Length: 292aa    MW: 32273.9 Da    PI: 5.0109
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_185410_gqhm.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox665.1e-21109169257
                        T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                        r+R+t+t+ ql++Le+ F + + +ps+++++e++ +l    +++e++V++WFqNrRa+ k+
  Sp_185410_gqhm.t1 109 RQRWTPTPVQLQILERIFDQgTGTPSKQKIKEITIELsqhgQISETNVYNWFQNRRARSKR 169
                        89*****************99**************************************97 PP
2Wus_type_Homeobox102.43.1e-33108171265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ar+RWtPtp Q++iLe+++++G+ tP+k++i++it eL+++G+i+++NV++WFQNr+aR+++kq
  Sp_185410_gqhm.t1 108 ARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITIELSQHGQISETNVYNWFQNRRARSKRKQ 171
                        789***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.495105170IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.7E-17106177IPR009057Homeodomain-like
SMARTSM003892.5E-14107174IPR001356Homeobox domain
SuperFamilySSF466898.13E-18108172IPR009057Homeodomain-like
CDDcd000861.36E-13109170No hitNo description
PfamPF000468.0E-19109169IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MMDPQQISTP QLQPHDGGIG TGNGMMNGGG IDGNGGHIGG INGVLYVKVM TDEQLEILRT  60
QIAVYATICE QLVEMHKAIT AQQDLAGVRL GNLYCDPLVT AVGHKITARQ RWTPTPVQLQ  120
ILERIFDQGT GTPSKQKIKE ITIELSQHGQ ISETNVYNWF QNRRARSKRK QQNNNAQNNA  180
ESEVETDAES PKDKKTKPED FQSQPNSMLR AEDSCFQNQE MSSSMHTIDS QSGKMDSVFA  240
SDGSSKSTQC FSQLGFYDSI LQNPRIDDLI GKMEVPGGYN AYQSTEDYSM TG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162170RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00669PBMTransfer from GRMZM2G038252Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021835543.10.0WUSCHEL-related homeobox 8
SwissprotQ5QMM38e-91WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLA0A0K9QH840.0A0A0K9QH84_SPIOL; Uncharacterized protein
STRINGXP_010680605.11e-169(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.12e-89WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]