PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_184570_nqgn.t1
Common NameSOVF_184570
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 371aa    MW: 41025.6 Da    PI: 5.6882
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_184570_nqgn.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.62.6e-14174220354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  Sp_184570_nqgn.t1 174 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 220
                        79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.907171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-11174220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-14175229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-14175226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-13177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.07E-5184223No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MNRSGNNIQE LQEEELQVDY QDCPQQNNSI ILNNNLEMQQ YHQATTSHSD PFVGSFGGGG  60
GRPGMVFQDH SPPPPMPVQP HILPWDLPQV HSFPQTHDPF FFPSSSSYGG LFTRRPSNSL  120
QFAYEGSSSD HLRLLSDALG PMVQPGSAPF GLQAELNKMT AQEIMDAKAL AASKSHSEAE  180
RRRRERINNH LAKLRSLLPS TTKTDKASLL AEVIQHVKEL RRQTSVIAET SVIPTESDEL  240
TVDAASDEQD GRFIIKASLC CDDRSDLLPD LIKALKTLRL KTLKAEISTL GGRVKNVLFV  300
THEPNNSDHD NNSNNINENN HDHDEQPPPD HCSIDLIQEM LKAVMEKSGG GDESAASGNP  360
KRQRTTNITI S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179184ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021835318.10.0transcription factor bHLH30-like
SwissprotQ9S7Y11e-101BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A0K9QFP50.0A0A0K9QFP5_SPIOL; Uncharacterized protein
STRINGXP_010681418.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.17e-87bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]