PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_180830_utra.t1
Common NameSOVF_180830
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family HSF
Protein Properties Length: 417aa    MW: 46540.4 Da    PI: 5.9592
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_180830_utra.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.24e-36681672102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k++e+++d+e++ +isw e+ ++f+++de++f++++Lpk Fkhsnf+SFvRQLn+YgF+kv+++e++ + +++  e++h+ F+kgkk l
  Sp_180830_utra.t1  68 FLNKTFEMVDDPEIDPIISWGETFTTFIIWDETKFTTHLLPKNFKHSNFSSFVRQLNTYGFRKVTTSEQS-TLHPDRCEYEHPGFQKGKKYL 158
                        9******************************************************************987.557999*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++ikr+ +
  Sp_180830_utra.t1 159 LKTIKRRVH 167
                        ******976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.32E-3264165IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.4E-5064165IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.2E-3764165IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000568.3E-176891IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.5E-3168165IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.3E-17106118IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340107131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.3E-17119131IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MDTKNEFSLR LQLGGRSRGG GGGCGVCCGG RDVNVVRVKE EEEGCEDEEV MEVPKPMMSL  60
HEIGPPPFLN KTFEMVDDPE IDPIISWGET FTTFIIWDET KFTTHLLPKN FKHSNFSSFV  120
RQLNTYGFRK VTTSEQSTLH PDRCEYEHPG FQKGKKYLLK TIKRRVHDHS TISNDARLLL  180
HKKEAEIQNL KKEQEILKAE ISDLKQQQHN SDTCLSAMVD RVKSVEWKQR EFLMLLANAM  240
KRTNSFQQML QTYRQKKVLV GGGCGGGSGG GGEVFKKRRL ASSGSFVDSF LAKGITQNAD  300
NSDQCYKPDM SATVRGEHGP DNRTGSVIGS DMSAATAAAA HQSEANLFFD QKSNLTSETN  360
SSPDFSSGSC AILEKLMADV ISEDNSKEEE LLQDIEQTLY VHELEDLLAK PPTLIVQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-256616627130Heat shock factor protein 1
5d5v_B3e-256616627130Heat shock factor protein 1
5d5v_D3e-256616627130Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11321GGRSRGGGG
2158164LKTIKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021858532.10.0heat shock factor protein HSF30-like
TrEMBLA0A0K9QGV20.0A0A0K9QGV2_SPIOL; Uncharacterized protein
STRINGXP_010696526.11e-111(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.14e-57heat shock transcription factor A2