PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_180300_cyek.t1
Common NameSOVF_180300
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WRKY
Protein Properties Length: 499aa    MW: 54791.8 Da    PI: 8.6863
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_180300_cyek.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.71.1e-33220276259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        dDgynWrKYGqK+vkgse+prsYYrCt+++Cpvkkkvers  d++++ei+Y+g+Hnhe
  Sp_180300_cyek.t1 220 DDGYNWRKYGQKQVKGSEYPRSYYRCTTPNCPVKKKVERSF-DGHITEIIYKGQHNHE 276
                        8****************************************.***************8 PP
2WRKY103.99e-33384442159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gC+v+k+ver+++d ++v++tYeg+Hnh+
  Sp_180300_cyek.t1 384 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTVGCKVRKHVERASTDHSAVITTYEGKHNHD 442
                        59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081124.455214278IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.4E-30216278IPR003657WRKY domain
SuperFamilySSF1182901.83E-26217278IPR003657WRKY domain
SMARTSM007744.5E-37219277IPR003657WRKY domain
PfamPF031062.0E-25220276IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.6E-36370444IPR003657WRKY domain
SuperFamilySSF1182908.37E-29376444IPR003657WRKY domain
PROSITE profilePS5081137.355379444IPR003657WRKY domain
SMARTSM007748.9E-38384443IPR003657WRKY domain
PfamPF031063.8E-25385442IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MSDFKDIHKL FGQQQQQRSI IAIPAKSGTE SSSTYTGALG GSSNSMSNLF TDPFPESEFR  60
SFSDLLAGAI ATHLPATGEL NWSNNNKGEN NVNGGNVVGG GCSRFKANRP GSLLLPPVTP  120
AFNISPGFSP SAFLSSPTFL SPLGMSPHQT LAHITAQAAL SQAHLSIQQA DINQHSSLAA  180
YQPSLFNTCT AARQPVVSEH PSHDRRPQTN FPVAVDKPAD DGYNWRKYGQ KQVKGSEYPR  240
SYYRCTTPNC PVKKKVERSF DGHITEIIYK GQHNHERPLT GRRGKDSSLL QQLSGNTSDA  300
QFGNSLWPRD YDSAQLPTSM QLNGPSDSEE SGENSELIDD EDCNQEPKAK RRNGGVGQCD  360
GGFTRTTMTE PKIVVQTRSD VDLLDDGYRW RKYGQKVVKG NPNPRSYYKC TTVGCKVRKH  420
VERASTDHSA VITTYEGKHN HDIPAIRGST SSITAANQLE ATQIKLHNNN HLIAQVNFGA  480
NNIQRPITLR LKEEQHVIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-37220445878Probable WRKY transcription factor 4
2lex_A3e-37220445878Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021835502.10.0probable WRKY transcription factor 3
TrEMBLA0A0K9QGS90.0A0A0K9QGS9_SPIOL; Uncharacterized protein
STRINGXP_010670218.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-113WRKY DNA-binding protein 3