PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_179660_yhcr.t1
Common NameSOVF_179660
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family HD-ZIP
Protein Properties Length: 390aa    MW: 42105.7 Da    PI: 7.0012
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_179660_yhcr.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.16.2e-18192246256
                        T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Sp_179660_yhcr.t1 192 RKKLRLSKEQSAFLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 246
                        778899***********************************************98 PP
2HD-ZIP_I/II127.36.7e-41192282192
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                        +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  Sp_179660_yhcr.t1 192 RKKLRLSKEQSAFLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-ALK 282
                        69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-18176246IPR009057Homeodomain-like
SuperFamilySSF466897.27E-19183249IPR009057Homeodomain-like
PROSITE profilePS5007117.216188248IPR001356Homeobox domain
SMARTSM003892.1E-16190252IPR001356Homeobox domain
PfamPF000462.2E-15192246IPR001356Homeobox domain
CDDcd000861.02E-16192249No hitNo description
PROSITE patternPS000270223246IPR017970Homeobox, conserved site
CDDcd146860.00624241280No hitNo description
SMARTSM003402.4E-25248291IPR003106Leucine zipper, homeobox-associated
PfamPF021838.3E-11248282IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MELALSLGNR GVESNSVGYC MGSSSTARRS TAEKLGGEDD DHEINGGSSS SSDPSPLQLD  60
LLPFSPVPRS IQPPPPLRFP WLADNLSSEP GSSDGPGSKI MEANRRPAVG ATAEEVEEHS  120
SPNSGTSSFM EFSLYTSNNN NNNNNKRGID SLNNNYGQEM IGIVVGGRGG DQGERGATTS  180
RGSDDDENGS TRKKLRLSKE QSAFLEESFK EHHTLNPKQK LALAKQLNLR PRQVEVWFQN  240
RRARTKLKQT EVDCEYLKRC CETLTEENRR LQKELQELRA LKTSQPFFMQ RPATTLTMCP  300
SCERVAPTST TTITTTSTPT STSTPVCTVP APSTPTATIT TATTSVVTIA TNANPAVSGD  360
SNDVTLSLGK PNNKLPILPF SNAKSHQAAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190196TRKKLRL
2240248RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021835736.10.0homeobox-leucine zipper protein HOX11-like
SwissprotP466651e-79HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A0K9QH040.0A0A0K9QH04_SPIOL; Uncharacterized protein
STRINGXP_010672636.11e-169(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.19e-63homeobox from Arabidopsis thaliana