PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_178240_uwko.t1

Common Name

SOVF_178240

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

HSF

Protein Properties

Length: 487aa MW: 54017.2 Da PI: 6.2038

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_178240_uwko.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109.2	3e-34	16	106	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 Fl k+y++++d+++++++sws+++ sf+v+++ efa+ +Lp++Fkh+nf+SF+RQLn+YgF+k++ e+ weF++++F k+kk+l Sp_178240_uwko.t1 16 FLLKTYDMVDDSSTDNIVSWSSSNASFIVWNPPEFARLLLPTFFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEEFIKDKKHL 98 9**************************************************************999.........*********** PP XXXXXXXX CS HSF_DNA-bind 94 lekikrkk 101 l++i+r+k Sp_178240_uwko.t1 99 LKNIHRRK 106 ****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.0E-36	12	105	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.9E-34	12	105	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	5.6E-59	12	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.0E-18	16	39	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.1E-29	16	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.0E-18	54	66	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	55	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.0E-18	67	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence Send to blast
METSTSGGGG GGPAPFLLKT YDMVDDSSTD NIVSWSSSNA SFIVWNPPEF ARLLLPTFFK 60 HNNFSSFIRQ LNTYGFRKID PERWEFANEE FIKDKKHLLK NIHRRKPIHS HSHPPPDPER 120 AAFEEEIEKL SREKNELDTK VSGFNMHHCA AKSQLEDVTL RICDMEKRQE KLLTYLQKAV 180 QNVAFVEHLS QKIEVMDLTA YNKKRRLPRS DFFLPAVENN LGDNQSYCRP EFASIYQQDL 240 ANKLKLELST AVSNMNLISN STNSSNEDWA SPTRRSSGTD PKDAELGICT LPFATETLDL 300 SEARACLGFK MDASLSDKVV KDCPGLLPSL QQNLVSAEEC EGQICCQLNL SLASSPVQPP 360 NQNAYSNRAI HMDVVASGSQ GTTKPDANGS NRDGLGASSK NNHPISKVGN SSSSPETRSN 420 NKDHTPAAAP ARVNDVFWEQ FLTERPGASD TEEASSCYRA LPGEEQEDRG SSHGMSRNAK 480 NLGKLTL

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence Send to blast

METSTSGGGG GGPAPFLLKT YDMVDDSSTD NIVSWSSSNA SFIVWNPPEF ARLLLPTFFK  60
HNNFSSFIRQ LNTYGFRKID PERWEFANEE FIKDKKHLLK NIHRRKPIHS HSHPPPDPER  120
AAFEEEIEKL SREKNELDTK VSGFNMHHCA AKSQLEDVTL RICDMEKRQE KLLTYLQKAV  180
QNVAFVEHLS QKIEVMDLTA YNKKRRLPRS DFFLPAVENN LGDNQSYCRP EFASIYQQDL  240
ANKLKLELST AVSNMNLISN STNSSNEDWA SPTRRSSGTD PKDAELGICT LPFATETLDL  300
SEARACLGFK MDASLSDKVV KDCPGLLPSL QQNLVSAEEC EGQICCQLNL SLASSPVQPP  360
NQNAYSNRAI HMDVVASGSQ GTTKPDANGS NRDGLGASSK NNHPISKVGN SSSSPETRSN  420
NKDHTPAAAP ARVNDVFWEQ FLTERPGASD TEEASSCYRA LPGEEQEDRG SSHGMSRNAK  480
NLGKLTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	3e-20	7	105	17	129	Heat shock factor protein 1
5d5v_B	3e-20	7	105	17	129	Heat shock factor protein 1
5d5v_D	3e-20	7	105	17	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021837890.1	0.0	heat stress transcription factor A-5
Swissprot	Q94BZ5	1e-146	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A0K9QHM8	0.0	A0A0K9QHM8_SPIOL; Uncharacterized protein
STRING	XP_010673379.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-133	HSF family protein

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]