PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_176410_amnr.t1
Common NameSOVF_176410
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family HSF
Protein Properties Length: 331aa    MW: 38172.3 Da    PI: 7.4448
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_176410_amnr.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.31.9e-36581492102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+y++++d+++++++sw e+++sfvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgFkkv  ++         weF++++Fkkg+k+l
  Sp_176410_amnr.t1  58 FLTKTYQLVDDPRTDHIVSWGEDETSFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVVADR---------WEFANEYFKKGEKHL 140
                        9****************************************************************999.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++i+r+k+
  Sp_176410_amnr.t1 141 LCDIHRRKT 149
                        *******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.4E-3949142IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.6E-5954147IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.35E-3455147IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.3E-3258147IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-195881IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-1996108IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434097121IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-19109121IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MAFLVERSDP LLHLHHQHHQ HQSIHQHHHH LNPEQQQQQQ QEMVFSVSES QKSVPAPFLT  60
KTYQLVDDPR TDHIVSWGED ETSFVVWRPP EFARDLLPNY FKHNNFSSFV RQLNTYGFKK  120
VVADRWEFAN EYFKKGEKHL LCDIHRRKTP QHHHQIHYQD QVLIPPHYLP SSPPPDESGG  180
SWINIDHHHH HHQSSSPLPS PKPTTTGGGG PNTDILTALT EDNQRLRKRN FMLVSELNHM  240
KTLYNDIIYF IQNHVKPAAP NSSNGNDQNR PPNNNNNNYN AMAAAQPKLI ELDNDDRDNH  300
GGGGGDSSNN RETIKLFGVP LHSKKRLHLA S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-225414926131Heat shock factor protein 1
5d5v_B7e-225414926131Heat shock factor protein 1
5d5v_D7e-225414926131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021843240.10.0heat stress transcription factor B-4b-like
SwissprotQ9C6351e-89HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A0K9QJR50.0A0A0K9QJR5_SPIOL; Uncharacterized protein
STRINGXP_010673780.11e-153(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.17e-64heat shock transcription factor B4