PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_174320_omwa.t1 | ||||||||
Common Name | SOVF_174320 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | SBP | ||||||||
Protein Properties | Length: 520aa MW: 57241.3 Da PI: 6.4043 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 133.2 | 8.6e-42 | 173 | 248 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC++dls+ak yhr+hkvC+vhsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q Sp_174320_omwa.t1 173 CQVYGCHKDLSSAKAYHRKHKVCDVHSKTSKVIVNGIEQRFCQQCSRFHLLGEFDDGKRSCRKRLAGHNERRRKPQ 248 **************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 5.2E-33 | 167 | 234 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.043 | 170 | 247 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.09E-38 | 171 | 250 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.6E-31 | 173 | 246 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 520 aa Download sequence Send to blast |
MESWCFDSLN KGFVSDETIS PSDSIIRNKS VLMGWEFKPS FSYEDSMLVS SQQSVENGCF 60 PEVGIAEMIR KQCPHDSTRN VLEDNGSIGD LYSPSLVTSN VISGNDESSS KFSSSVMDSS 120 SRESSLIDLK LGGFGDIPNS NSIRTAHVLS SAESSTLPKR ARVTSLSSQA AYCQVYGCHK 180 DLSSAKAYHR KHKVCDVHSK TSKVIVNGIE QRFCQQCSRF HLLGEFDDGK RSCRKRLAGH 240 NERRRKPQVG FSGRSGRSYQ SYTGSNFQGF TPTSTSFICQ DILPRGTSQS DTYGTNDWVK 300 HIKVEDGTGY AQKQFPFIDN TNNSESQIAA GENVSQYTHE LVSRSLYQRN SPRSEDLELL 360 DAASTIQGLP GISETGCALS LLSSQSRNSS GQSSTMPGDH PLIIPSSSSH YSVSEVSEKI 420 FGDGTQALTY GDQNSMISIN SMGRYQPSSM LALTNGEAAH FGNEIHHNSN YMNLKDHLLC 480 EDGTTIDLFQ LSSQLQRVEN QKLSEPLKQE TEGFCSLRMT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 6e-30 | 164 | 246 | 2 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021838067.1 | 0.0 | squamosa promoter-binding-like protein 13A | ||||
Refseq | XP_021838068.1 | 0.0 | squamosa promoter-binding-like protein 13A | ||||
TrEMBL | A0A0K9QIV6 | 0.0 | A0A0K9QIV6_SPIOL; Uncharacterized protein | ||||
STRING | XP_010667630.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 4e-48 | SBP family protein |