PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_173960_qnfi.t1
Common NameSOVF_173960
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 223aa    MW: 24583.8 Da    PI: 4.3264
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_173960_qnfi.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.18.9e-181766255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       +ykGVr +k +g+Wv+eIr p++   r r++lg++++ae+Aa+a +aa  +l+g
  Sp_173960_qnfi.t1 17 KYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDSAEKAARAFDAAQFCLRG 66
                       8*****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.0491774IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-201775IPR016177DNA-binding domain
SMARTSM003801.8E-311780IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-291775IPR001471AP2/ERF domain
CDDcd000181.08E-281776No hitNo description
PfamPF008473.7E-111766IPR001471AP2/ERF domain
PRINTSPR003671.9E-91829IPR001471AP2/ERF domain
PRINTSPR003671.9E-94056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MVKKTPEYEN KVDNSIKYKG VRKRKWGKWV SEIRLPNSRE RIWLGSYDSA EKAARAFDAA  60
QFCLRGKSAN FNFPDNPPEI AGGRGMTPSE IQAAAARFAN LSSSSEAAVV GGSCGGDQTI  120
RDEPTVEESM SYSPSFSDGA TVQMDCFDVV SGVETSFHEQ LSLSTTLGSG NFASDFGYFT  180
GYDDFTAGNY FTTPQQTDNN FGYVGEDDTY DASLYQDSYL WNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-1617741472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11824KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021857554.11e-166ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC21e-57ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A0K9QIZ01e-165A0A0K9QIZ0_SPIOL; Uncharacterized protein
STRINGXP_010687541.11e-103(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.18e-58ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]