PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_173830_wksr.t1
Common NameSOVF_173830
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family Trihelix
Protein Properties Length: 292aa    MW: 33151.4 Da    PI: 5.1154
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_173830_wksr.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.42.4e-1528118186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        +W+++ + +Liea  ++  +l+rg+l++++W+ev++++     + ++ +r+ +qCk++++ l+k+yk +k++  + + + +s +p+fd l+
  Sp_173830_wksr.t1  28 CWSEDATFTLIEAWGQRYIELNRGNLRQKQWQEVADAVnsrhgHVKKARRTDVQCKNRIDTLKKKYKIEKARVLDSNGGYKSPWPFFDPLD 118
                        7*************************************987766677799********************9999888888999*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.9E-2626120No hitNo description
SMARTSM005950.004336125IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MAEGPESSTP PSLAMISSSR PVPAREDCWS EDATFTLIEA WGQRYIELNR GNLRQKQWQE  60
VADAVNSRHG HVKKARRTDV QCKNRIDTLK KKYKIEKARV LDSNGGYKSP WPFFDPLDQL  120
IGSTMPLKKM SPSPPMAVPI IAHRTPAMLP QKRPAPSPSP PALTSAPFRG EESSYFRKNY  180
SAIAAAAAAA AESEEEEEEE EEEEDEEEVE VSGETSEADG IRKLARVIEK FGEVYARVEA  240
EKQRQMVELE KQRMQFAKEL ECQRMQMLVE MQVQLEKIKR AKRSDDSNDM YS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021843696.10.0trihelix transcription factor ASIL2-like
TrEMBLA0A0K9QIZ70.0A0A0K9QIZ7_SPIOL; Uncharacterized protein
STRINGXP_010686207.11e-159(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.15e-48sequence-specific DNA binding transcription factors