PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_172970_xkcf.t1 | ||||||||
Common Name | SOVF_172970 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | SBP | ||||||||
Protein Properties | Length: 95aa MW: 10969.3 Da PI: 7.4328 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 71.6 | 1.5e-22 | 24 | 70 | 2 | 48 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 Cq+++C++dl++ak+yhrrhkvCe+h+kapvv+v+ ++qrfCqqCs+ Sp_172970_xkcf.t1 24 CQADNCTSDLTDAKRYHRRHKVCEFHAKAPVVIVNSKHQRFCQQCSK 70 **********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 16.46 | 21 | 95 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.22E-21 | 22 | 71 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 1.3E-21 | 22 | 70 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.1E-16 | 24 | 70 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 95 aa Download sequence Send to blast |
MEGFNNSEDE QFMGNSLSYI DVYCQADNCT SDLTDAKRYH RRHKVCEFHA KAPVVIVNSK 60 HQRFCQQCSK CVSHIPPCSH PETYTLTSTS RYLYA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-16 | 14 | 70 | 1 | 57 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021835590.1 | 3e-47 | squamosa promoter-binding protein 1-like | ||||
TrEMBL | A0A0K9QJ27 | 9e-66 | A0A0K9QJ27_SPIOL; Uncharacterized protein | ||||
STRING | cassava4.1_018710m | 1e-22 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33810.1 | 1e-19 | squamosa promoter binding protein-like 3 |