PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_172560_ejse.t1
Common NameSOVF_172560
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 586aa    MW: 62400.1 Da    PI: 5.7289
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_172560_ejse.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.5e-11396438754
                        HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                        ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  Sp_172560_ejse.t1 396 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 438
                        79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.58389438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-16392460IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-14395444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-9395438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-16396451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.03E-13396442No hitNo description
CDDcd048731.53E-6508568No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MLSRSNTLAW MGGERDEDNS PLAWNNNNRG LNCDNAVAAA AAGGGGCGSG DGGGRGESNR  60
EGFVSNVDVV GSLSSFKSML DVENEWYNTI NNNQNTMNFS NEGTENLLLN QIDSSSSCSP  120
SPSVFNGNTL DPSQVSYLFS SKPTIFNNPL TQGFGLSNGF FQEPHQIPDL MNRGGGILSG  180
FTEFSHQNEM GSPNLGSNSQ FSTPHLVQLG ENDGFGIGSG SRFRGLEEGL GSSMFMNRTS  240
KLLKPLDNSA PVGAQPTLFQ KRAALRKNVF GVGDGGSDSG NLLNSRGGGG DDSGFNSNGG  300
GEGGDDRKLN SGGENEKKRK FGNVGVLDSV SLDGSAFNYD SDDFTENNSF KIGGDDGAKN  360
GGTNSNNNST LTGGGGGGGG VDSKGKKKGL PAKNLMAERR RRKKLNDRLY MLRSVVPKIS  420
KMDRASILGD AIEYLKELLQ KINDLHNELE STPPCSLPQT TNFHPLTPTL PNLPSRIKEE  480
LCPSSLPSPN GQPARIEVRL REGRAVNIHM FCGRRPGLLL STMRALDGLG LDIQQAVISC  540
FNGFAMDIFR AEQCKDGQDL HPDQVKALLL DLATFHGSTV MGNCNM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14391448663Transcription factor MYC2
5gnj_B2e-14391448663Transcription factor MYC2
5gnj_E2e-14391448663Transcription factor MYC2
5gnj_F2e-14391448663Transcription factor MYC2
5gnj_G2e-14391448663Transcription factor MYC2
5gnj_I2e-14391448663Transcription factor MYC2
5gnj_M2e-14391448663Transcription factor MYC2
5gnj_N2e-14391448663Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1385403KKKGLPAKNLMAERRRRKK
2397404ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021844769.10.0transcription factor ICE1-like
TrEMBLA0A0K9QL130.0A0A0K9QL13_SPIOL; Uncharacterized protein
STRINGXP_010678348.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-116bHLH family protein