PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_172520_tiqt.t1
Common NameSOVF_172520
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WRKY
Protein Properties Length: 213aa    MW: 24604 Da    PI: 8.9506
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_172520_tiqt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.35.5e-32134192159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ vv++tY g H h+
  Sp_172520_tiqt.t1 134 LDDGYRWRKYGQKAVKNNKFPRSYYRCTYQGCNVKKQVQRLSNDEGVVVTTYDGIHSHS 192
                        59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-33119192IPR003657WRKY domain
SuperFamilySSF1182904.18E-29126193IPR003657WRKY domain
PROSITE profilePS5081129.493129194IPR003657WRKY domain
SMARTSM007741.1E-37134193IPR003657WRKY domain
PfamPF031061.4E-25135191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0010055Biological Processatrichoblast differentiation
GO:0032107Biological Processregulation of response to nutrient levels
GO:0043620Biological Processregulation of DNA-templated transcription in response to stress
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MEAYSIFSSS TNSSTSSPTN NSNFPFSLSQ VSSSSNSFDH NKMDQSYHHL SQRIPPPMVV  60
VQAHELMSNH NYHDIITPLN NHHQDNDDDQ KKRIIMDNDD NSNSNSASNK KGSLEKKAKK  120
HRFAFQTRSQ VDILDDGYRW RKYGQKAVKN NKFPRSYYRC TYQGCNVKKQ VQRLSNDEGV  180
VVTTYDGIHS HSIERSTDNF EHILTQMQIY NSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-28124193776Probable WRKY transcription factor 4
2lex_A4e-28124193776Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00506DAPTransfer from AT5G13080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021845871.11e-158probable WRKY transcription factor 75
TrEMBLA0A0K9QLB01e-157A0A0K9QLB0_SPIOL; Uncharacterized protein
STRINGXP_010682719.12e-74(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.14e-58WRKY DNA-binding protein 75