PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_169430_giut.t1

Common Name

SOVF_169430

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

Nin-like

Protein Properties

Length: 625aa MW: 71051.8 Da PI: 5.5732

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_169430_giut.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	32.9	1.2e-10	552	591	5	44
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRW 44 +s edl yF++++++AA +Lgv+ ++LKr+C + I+ W Sp_169430_giut.t1 552 VSKEDLLPYFKGTLTEAAHHLGVSKSTLKRKCKDLKIENW 591 6889*********************************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	10.353	538	620	IPR003035	RWP-RK domain
Pfam	PF02042	5.5E-11	552	591	IPR003035	RWP-RK domain
Gene3D	G3DSA:1.10.10.60	7.8E-4	558	589	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 625 aa Download sequence Send to blast
MLSPELVVEP VPDGIFTSYG SSDPQFHSWV MVDYFPDNNN SGENEDGLGT LSRVDEPTPT 60 NSLPEELVPP FSPVSNFIDQ VNDDGSGIVK LLAEQNLEKT LIEFKPQIKP NQIVAAQLWF 120 PTQIVKKNAL RSSQRNITGT WTETQRFMTD VSEGYLCESL TRVYSCDRKT KTGRSFNFID 180 SLIPYLSATE EVTYLLNRQV SVSAFRLRIP QWAPNLHIYK SAGNRNDIKG PKPSLSQGNY 240 IICGTLAIPV FDPYTNVCVG VYEVVIASTE VDHDVIAIIC NLLKTVNLRA DTQFHYQPRQ 300 RILAEILKII TKVCENHDLP LAQTWMPCTC CDQSSKGQQL CMSNAELPFY MRDSSYYPFW 360 QASTMYHMTE GQAVAGTTFS SKGLCFCRDI TRFPDNFSLV SLSREFKLSC SLAVCLGSSY 420 ANNDVYIVQF FWPNTLKKTL EEDDEMVMSI TMGIKQQFDK LSMVSPTYQE LEAESEQVVY 480 STKHIESDGN GDEFFTLLSN TMTGEEEHSK VSIKQPEEIS FNLLNEETKC IDHGIEVVDR 540 KVSKKSRKKF IVSKEDLLPY FKGTLTEAAH HLGVSKSTLK RKCKDLKIEN WQDERKKKGI 600 GVPARKKRTT KRKLHEEMEF IEEEF

Sequence ? help Back to Top

Protein Sequence Length: 625 aa Download sequence Send to blast

MLSPELVVEP VPDGIFTSYG SSDPQFHSWV MVDYFPDNNN SGENEDGLGT LSRVDEPTPT  60
NSLPEELVPP FSPVSNFIDQ VNDDGSGIVK LLAEQNLEKT LIEFKPQIKP NQIVAAQLWF  120
PTQIVKKNAL RSSQRNITGT WTETQRFMTD VSEGYLCESL TRVYSCDRKT KTGRSFNFID  180
SLIPYLSATE EVTYLLNRQV SVSAFRLRIP QWAPNLHIYK SAGNRNDIKG PKPSLSQGNY  240
IICGTLAIPV FDPYTNVCVG VYEVVIASTE VDHDVIAIIC NLLKTVNLRA DTQFHYQPRQ  300
RILAEILKII TKVCENHDLP LAQTWMPCTC CDQSSKGQQL CMSNAELPFY MRDSSYYPFW  360
QASTMYHMTE GQAVAGTTFS SKGLCFCRDI TRFPDNFSLV SLSREFKLSC SLAVCLGSSY  420
ANNDVYIVQF FWPNTLKKTL EEDDEMVMSI TMGIKQQFDK LSMVSPTYQE LEAESEQVVY  480
STKHIESDGN GDEFFTLLSN TMTGEEEHSK VSIKQPEEIS FNLLNEETKC IDHGIEVVDR  540
KVSKKSRKKF IVSKEDLLPY FKGTLTEAAH HLGVSKSTLK RKCKDLKIEN WQDERKKKGI  600
GVPARKKRTT KRKLHEEMEF IEEEF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	579	597	KRKCKDLKIENWQDERKKK
2	606	613	KRTTKRKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021854358.1	0.0	protein NLP6-like isoform X2
TrEMBL	A0A0K9QKC6	0.0	A0A0K9QKC6_SPIOL; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	2e-57	Nin-like family protein