PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_167700_kkgk.t1
Common NameSOVF_167700
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 552aa    MW: 60173.9 Da    PI: 5.1389
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_167700_kkgk.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.24.5e-16290336455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  Sp_167700_kkgk.t1 290 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 336
                        6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.82E-17280340No hitNo description
SuperFamilySSF474594.97E-21283353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.146286335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-13290336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-22290344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-17292341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MEDDQQHLNP NSSAIARPKV NDDEILELLW QDGQIVAQPQ NQQKSQSPST TQNQYQNDQQ  60
QQQQQQQQQQ QPQQQHLYMA EDEMATWLHY PMEDLYSELY QAPPPPPVAT VSQQQVVRPP  120
PASTASSVRP PPVPPSPRVT KNFPMFSKMR GKDPEVSSSK PGLTVVESNT TPPALTTMKS  180
IGEVSSVCPG GGGIERLLDK GGGSGEVTVS SSSGGYSGGP TTTTTAVTAS EDFEDKGVKS  240
EVEDRKRKQR EISEPTTPTT ATDQDVELEA DDEDEKKHSR GSKRSRAAEV HNLSERRRRD  300
RINEKMKALQ ELIPRCNKSD KASMLDEAIE YLKSLQMQVQ MMSMGCGMVP MMYPGMQQQY  360
MPQMGLGMGM DMGINRPMMP YPPSTIPGSN MQMQNPPAVA VAAAAAAAAA AGPQYGPRFT  420
SSPIRMPSMT VSNLSVNQAS NQPDSSRTSN PVQSPGLPQL PNVSDPYQQY MAAQQIQMQM  480
QMQMQMQAAQ NQSISQPGSS RPSTSRSEGQ PGSSRPSTSR SEGKPGSSRP SSSRSEGQPG  540
PNTSKNEAED DQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1294299ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021835793.10.0transcription factor PIF1-like
RefseqXP_021835794.10.0transcription factor PIF1-like
TrEMBLA0A0K9QKT20.0A0A0K9QKT2_SPIOL; Uncharacterized protein
STRINGXP_010684995.11e-150(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.33e-40phytochrome interacting factor 3-like 5