PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_166410_xjps.t1

Common Name

SOVF_166410

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

Nin-like

Protein Properties

Length: 922aa MW: 102937 Da PI: 5.4915

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_166410_xjps.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	5.1e-29	595	645	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Sp_166410_xjps.t1 595 EKTVSLSVLQQYFSGSLKDAAKNIGVCPTTLKRICRQHGISRWPSRKINKV 645 899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.063	579	665	IPR003035	RWP-RK domain
Pfam	PF02042	5.8E-26	597	645	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.29E-22	813	904	No hit	No description
SMART	SM00666	7.9E-21	822	904	IPR000270	PB1 domain
PROSITE profile	PS51745	21.963	822	904	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	8.1E-24	822	903	No hit	No description
Pfam	PF00564	8.7E-17	823	903	IPR000270	PB1 domain
CDD	cd06407	1.48E-30	823	903	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 922 aa Download sequence Send to blast
MEYSFAPKEK GNSIWGSSCP QSDIPMAVDS EAMNSTEHHH FVNMSEMMNL DSFGGWCNNL 60 STNEQLLASY AYSSMPSNYT CYDQLSFAEQ SNSTFPMNDS DCSTLNVFGS PLDYVDKIVF 120 AHKDAQLSPP LGSLEDNDCS SKQENMFMLS QNRVPRSLGQ SLPERMLRAL SLFKESSGGG 180 ILAQVWVPIR SGDHHILSTC EQPYLLDKML LGYREVSRSY TFSVEQKPGS FPGLPGRVFI 240 SKLPEWTSNV SYYSSAEYLR VKHALDHEVR GSVALPIFNS DESSCVAVLE LVTVREKSNF 300 DLEMESVCRA LEAVDLKTTT PSRLLPQRLS LNQKTALAEI TDVLRAVCHA HRLPLALTWI 360 PCTFEERDGE QKLRVHVKDN SLDVNEKSIL CIEETACYVN DKEMEGFVHA CAEHFLEEGQ 420 GVAGKALQSN LPFFFPDVKN YHISEYPLVQ HARKFGLSAA VAIRLRSTYT GDDDYILEFF 480 LPLNMKGNKE QQLLLDSLAG TMQRICRSLR TVTDEELISS PDTKVECCDV SKSFLPRDVF 540 LTSSPQLHAQ NGSHGTNQVS CDKPSMRNDN INEDGNSDQA SGSRRPMEKK RSTSEKTVSL 600 SVLQQYFSGS LKDAAKNIGV CPTTLKRICR QHGISRWPSR KINKVNRSLR KIQTVLDSVE 660 GVEGGLKFDP MTGELVASGS VIQEAGARKS LFLPSKSVPS QQCEVGKQNE MCFYENGEIP 720 KVKPENGSDI IESQNEIGIS SNFVQELRKS SGVDYINLVS HPNSCEIERS DGGVSEHHHA 780 TSSGMTDSSN ASGSMCSSPR QSSNDKRRKS EEKMSSEDGR SRITIKVTYK EDTVRFKFEQ 840 STGCLNLYQE VANRFNIQLG NFQLKYLDDE QEWVMLVNDS DLQECLEIME YLGKNSIKFL 900 VRDLTFGMGS SGASNCYLTQ SC

Sequence ? help Back to Top

Protein Sequence Length: 922 aa Download sequence Send to blast

MEYSFAPKEK GNSIWGSSCP QSDIPMAVDS EAMNSTEHHH FVNMSEMMNL DSFGGWCNNL  60
STNEQLLASY AYSSMPSNYT CYDQLSFAEQ SNSTFPMNDS DCSTLNVFGS PLDYVDKIVF  120
AHKDAQLSPP LGSLEDNDCS SKQENMFMLS QNRVPRSLGQ SLPERMLRAL SLFKESSGGG  180
ILAQVWVPIR SGDHHILSTC EQPYLLDKML LGYREVSRSY TFSVEQKPGS FPGLPGRVFI  240
SKLPEWTSNV SYYSSAEYLR VKHALDHEVR GSVALPIFNS DESSCVAVLE LVTVREKSNF  300
DLEMESVCRA LEAVDLKTTT PSRLLPQRLS LNQKTALAEI TDVLRAVCHA HRLPLALTWI  360
PCTFEERDGE QKLRVHVKDN SLDVNEKSIL CIEETACYVN DKEMEGFVHA CAEHFLEEGQ  420
GVAGKALQSN LPFFFPDVKN YHISEYPLVQ HARKFGLSAA VAIRLRSTYT GDDDYILEFF  480
LPLNMKGNKE QQLLLDSLAG TMQRICRSLR TVTDEELISS PDTKVECCDV SKSFLPRDVF  540
LTSSPQLHAQ NGSHGTNQVS CDKPSMRNDN INEDGNSDQA SGSRRPMEKK RSTSEKTVSL  600
SVLQQYFSGS LKDAAKNIGV CPTTLKRICR QHGISRWPSR KINKVNRSLR KIQTVLDSVE  660
GVEGGLKFDP MTGELVASGS VIQEAGARKS LFLPSKSVPS QQCEVGKQNE MCFYENGEIP  720
KVKPENGSDI IESQNEIGIS SNFVQELRKS SGVDYINLVS HPNSCEIERS DGGVSEHHHA  780
TSSGMTDSSN ASGSMCSSPR QSSNDKRRKS EEKMSSEDGR SRITIKVTYK EDTVRFKFEQ  840
STGCLNLYQE VANRFNIQLG NFQLKYLDDE QEWVMLVNDS DLQECLEIME YLGKNSIKFL  900
VRDLTFGMGS SGASNCYLTQ SC

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021845017.1	0.0	protein NLP9-like
Swissprot	Q9M1B0	0.0	NLP9_ARATH; Protein NLP9
TrEMBL	A0A0K9QLA0	0.0	A0A0K9QLA0_SPIOL; Uncharacterized protein
STRING	XP_010682023.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein