PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_166080_roit.t1
Common NameSOVF_166080
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WRKY
Protein Properties Length: 437aa    MW: 48049.6 Da    PI: 7.2247
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_166080_roit.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.63.4e-3047103259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        +DgynWrKYGqK+vkg+e+ rsYY+C++++C+vkk+vers  d+++++itY g+H+h 
  Sp_166080_roit.t1  47 EDGYNWRKYGQKNVKGNEYIRSYYKCSHPNCQVKKQVERSL-DGRITDITYLGKHDHA 103
                        7****************************************.***************7 PP
2WRKY105.92e-33222280159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ++Dgy+WrKYGqK+vkg+++prsYYrC+++gCpvkk+ver+++d kvv++tYegeH+h+
  Sp_166080_roit.t1 222 VNDGYRWRKYGQKMVKGNPNPRSYYRCSTTGCPVKKHVERASHDLKVVITTYEGEHDHS 280
                        58********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.74541105IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.1E-2841105IPR003657WRKY domain
SuperFamilySSF1182901.07E-2442105IPR003657WRKY domain
SMARTSM007741.2E-3446104IPR003657WRKY domain
PfamPF031061.9E-2347102IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-35208282IPR003657WRKY domain
SuperFamilySSF1182902.48E-29214282IPR003657WRKY domain
PROSITE profilePS5081135.531217282IPR003657WRKY domain
SMARTSM007741.3E-38222281IPR003657WRKY domain
PfamPF031064.8E-26223279IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MGTQEENAVI VTPKDALEQR LSPDSTIHAS SIDREGNASI VPEKPSEDGY NWRKYGQKNV  60
KGNEYIRSYY KCSHPNCQVK KQVERSLDGR ITDITYLGKH DHAKPHSDPL ATVPSLLSVK  120
LQIPDCPQPP VDEDKPSDAH ALTIVTTDHV KKMEVCRYAI VKMADDSTPV SLTPSSQARD  180
DHSENFTLKR RKRGTDGVDS STEKTNHESR IIVHTVSEVD IVNDGYRWRK YGQKMVKGNP  240
NPRSYYRCST TGCPVKKHVE RASHDLKVVI TTYEGEHDHS MPPIRTIVPQ TAAGSAGGTE  300
SNGMSKSKSE ESDAAQDGAI IGKPEKGDST TKEEESKSAI VARTENPLTK AERTDHIPPT  360
AKEEIGQTAK QEKVSTVNVV LKPEVVPTKE QKPGAISDMK PEVVLSEGKR ADTIVESSRA  420
EAKSNGLQRP NAEAVNC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-3848283175WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00094SELEXTransfer from AT2G04880Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021865070.10.0WRKY transcription factor 1
SwissprotQ9SI375e-76WRKY1_ARATH; WRKY transcription factor 1
TrEMBLA0A0K9QLB20.0A0A0K9QLB2_SPIOL; Uncharacterized protein
STRINGXP_010666094.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.26e-80zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]