PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_166070_cjqy.t1
Common NameSOVF_166070
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family GRAS
Protein Properties Length: 517aa    MW: 57330.2 Da    PI: 5.9849
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_166070_cjqy.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS441.84.7e-1351465152374
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                        +++L +cA+av+++d   aq+l+ +l++++s +gdp+qRl ay++e+L ar a+s+s++ykal+++e +   s++ l++l++++ev+P++kf
  Sp_166070_cjqy.t1 146 KQVLAACARAVAENDELVAQWLMDELRQMVSVSGDPVQRLGAYMLEGLVARQASSGSSIYKALKSKEPA---SADLLSYLHILFEVCPYIKF 234
                        689*****************************************************************9...9******************* PP

               GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183
                        +++ aN aI ea+++e+rvHiiDf+i+qG QW++Llqa+a+Rp+g+p++RiTg++++ s   +   l+ +g+rL+++A++++vpfef++ v 
  Sp_166070_cjqy.t1 235 GYMSANGAIAEAMKNERRVHIIDFQIGQGSQWVTLLQAFAARPGGAPHIRITGIDDSYSAyaRGGGLNIVGQRLSRLAQAFKVPFEFHA-VD 325
                        ********************************************************877788999************************.56 PP

               GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                         +   ++l++  +++gEalaVn++++lh+++desvs+e++rd++L++vk+l+Pkvv++veqe+++n++ Fl rfle+l+yy+a f+s++++l
  Sp_166070_cjqy.t1 326 ISGCRVQLKDVGIRRGEALAVNFAFMLHHMPDESVSTENHRDRLLRMVKGLNPKVVTLVEQECNTNTAAFLPRFLETLDYYMATFESMDVTL 417
                        68999*************************************************************************************** PP

               GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367
                        pr +++ri+vE+++l+r++vn++acegaer+erhe l+kW++r+++aGFkp+pls  +++++k+ll+++  d yr+ee++g+l+lgW++r L
  Sp_166070_cjqy.t1 418 PRVHRDRINVEQHCLARDVVNLIACEGAERVERHELLGKWKSRFTMAGFKPYPLSVLVNSTIKTLLKNYC-DSYRLEERDGALYLGWMNRDL 508
                        *********************************************************************9.66******************* PP

               GRAS 368 vsvSaWr 374
                        v+ +aW+
  Sp_166070_cjqy.t1 509 VASCAWQ 515
                        ******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.069119496IPR005202Transcription factor GRAS
PfamPF035141.6E-132146515IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MPQCQSLNPQ LCYSNISNET SKVVSPGQYN TLESSSGSSS YAQLSSTSSL TFASSGSLLD  60
SSSYQPDQYC SPDYANNSPM SNSCITDDCG DLKCKLRELE SVMLGPDTSD LIDGYCNMIE  120
SGSHVTPLEM DSWGKVIEII ARKDVKQVLA ACARAVAEND ELVAQWLMDE LRQMVSVSGD  180
PVQRLGAYML EGLVARQASS GSSIYKALKS KEPASADLLS YLHILFEVCP YIKFGYMSAN  240
GAIAEAMKNE RRVHIIDFQI GQGSQWVTLL QAFAARPGGA PHIRITGIDD SYSAYARGGG  300
LNIVGQRLSR LAQAFKVPFE FHAVDISGCR VQLKDVGIRR GEALAVNFAF MLHHMPDESV  360
STENHRDRLL RMVKGLNPKV VTLVEQECNT NTAAFLPRFL ETLDYYMATF ESMDVTLPRV  420
HRDRINVEQH CLARDVVNLI ACEGAERVER HELLGKWKSR FTMAGFKPYP LSVLVNSTIK  480
TLLKNYCDSY RLEERDGALY LGWMNRDLVA SCAWQCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-581455154375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021865077.10.0scarecrow-like protein 21
RefseqXP_021865078.10.0scarecrow-like protein 21
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A0K9QMW30.0A0A0K9QMW3_SPIOL; Uncharacterized protein
STRINGXP_010666093.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]