PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_165590_jids.t1
Common NameSOVF_165590
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family HD-ZIP
Protein Properties Length: 843aa    MW: 91396.3 Da    PI: 6.2449
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_165590_jids.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.73.1e-21145200156
                        TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        +++ +++t++q++eLe++F+++++p++++r eL+kkl L++rqVk+WFqNrR+++k
  Sp_165590_jids.t1 145 KKRYHRHTPQQIQELEAVFKECPHPDEKQRLELSKKLCLETRQVKFWFQNRRTQMK 200
                        688999***********************************************999 PP
2START195.52.4e-613585841206
                        HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS
              START   1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.... 77 
                        ela++a++elvk+a+++ep+W +s       e++n +e++++f +  +     +  ea r+sg+v+ ++  lve+l d + +W e+++    
  Sp_165590_jids.t1 358 ELALAAMDELVKLAQSDEPLWLRSMdaaggrEILNHEEYMRSFNPCIGmkpngFVPEATRDSGMVIINSLALVETLTDAN-RWAEMFPgmia 448
                        5899***************************************9988899999999************************.*********** PP

                        EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS
              START  78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162
                        +a+t++vissg      galqlm aelq+lsplvp R + f+R+++q+ +g+w++vdvS+d  ++ + s+ +v +++lpSg+++++++ng+s
  Sp_165590_jids.t1 449 RATTTDVISSGmggtrnGALQLMHAELQVLSPLVPvRVVNFLRFCKQHAEGVWAVVDVSIDCIRESSGSPTYVNCRRLPSGCVVQDMPNGYS 540
                        *****************************************************************999************************ PP

                        EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
              START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                        kvtwveh++++++++h+l+rslv++g+ +ga++w  tlqrqce+
  Sp_165590_jids.t1 541 KVTWVEHAEYDESSVHQLFRSLVSTGMGFGAQRWITTLQRQCEC 584
                        ******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.63E-20131202IPR009057Homeodomain-like
PROSITE profilePS5007117.232142202IPR001356Homeobox domain
SMARTSM003891.7E-18143206IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-21143210IPR009057Homeodomain-like
CDDcd000863.84E-19144202No hitNo description
PfamPF000469.4E-19145200IPR001356Homeobox domain
PROSITE patternPS000270177200IPR017970Homeobox, conserved site
PROSITE profilePS5084843.348349587IPR002913START domain
SuperFamilySSF559611.92E-32351584No hitNo description
CDDcd088752.97E-121353583No hitNo description
SMARTSM002341.7E-45358584IPR002913START domain
PfamPF018521.1E-53358584IPR002913START domain
SuperFamilySSF559613.57E-25611836No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    Send to blast
MNFGGFLDSS GAGAEAGGGG GGGAKLVTDI SYNNNMPPGA ITHHQQQQLQ QQQQQRLVGP  60
TSINNKSFFN TPGLSLALQT GMEGHGEVTR VTEQNYDGNS NGGGGGVSVG VRRSREDEHE  120
SRSGSDNLDG ASGDEQDIAD LPPRKKRYHR HTPQQIQELE AVFKECPHPD EKQRLELSKK  180
LCLETRQVKF WFQNRRTQMK TQLERHENSI LRQENDKLRA ENMSIREAMR NPICTNCGGQ  240
AMIGDISMEE QHLRIENARL KDELDRVCSL ASKFLGRPVS SLSTLSGAIS APPMPNSSLE  300
LAVGTNGFGP LTTVTTSSMP LGDYGSGISN AMPGVSPTKS TANVTGMERS FERSMYLELA  360
LAAMDELVKL AQSDEPLWLR SMDAAGGREI LNHEEYMRSF NPCIGMKPNG FVPEATRDSG  420
MVIINSLALV ETLTDANRWA EMFPGMIARA TTTDVISSGM GGTRNGALQL MHAELQVLSP  480
LVPVRVVNFL RFCKQHAEGV WAVVDVSIDC IRESSGSPTY VNCRRLPSGC VVQDMPNGYS  540
KVTWVEHAEY DESSVHQLFR SLVSTGMGFG AQRWITTLQR QCECLAILMS SNIPSGDHTA  600
ITASGRRSML KLAQRMTNNF CAGVCASSVH KWNKLNIGNV DEDVRVMTRK SIDDPGEPSG  660
IVLSAATSVW LPVSQQRLFD FLRDERLRSE WDILSNGGPM QEMAHIAKGQ DQGNCVSLLR  720
AGAMNPNQSS MLILQETCTD SSGSLVVYAP VDIPAMHVVM NGGDSAYVAL LPSGFAIVPD  780
GPGSRGTNNG SPQRGGGSLL TVAFQILVNS LPTAKLTVES VETVNNLISC TVQKIKAALN  840
CES
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021849370.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2-like
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A0K9QLI30.0A0A0K9QLI3_SPIOL; Uncharacterized protein
STRINGXP_010671720.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]