PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_164900_izqw.t1
Common NameSOVF_164900
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WRKY
Protein Properties Length: 343aa    MW: 37241.3 Da    PI: 10.1816
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_164900_izqw.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.51e-31272329359
                        -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        D y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+ +dp+++++tYegeHnh+
  Sp_164900_izqw.t1 272 DDYSWRKYGQKPIKGSPHPRGYYKCSTVrGCPARKHVERALDDPNMLVVTYEGEHNHS 329
                        99***********************9888****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.2E-16228268IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.806.9E-33259329IPR003657WRKY domain
PROSITE profilePS5081131.422265331IPR003657WRKY domain
SuperFamilySSF1182903.27E-27268329IPR003657WRKY domain
SMARTSM007743.1E-38270330IPR003657WRKY domain
PfamPF031064.5E-27272328IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MLSSSSTRTT TTTSSPSNFS LSLSSSSYRM EEAIANETAA GLQSVHNFLQ LLSLQKQPQF  60
PPAPNTEIDL NCQAVADDAV LRFKKVISLL GRARTGHARF RRGPIVVDQK PHQNGVVLCP  120
EPLQQVPPPM MKLNGFDYAT GTPTAKINYS YSSPVISVGN SVKSTLTGDM DSISNKHDIS  180
MSRAGTPSGA INTTTSTTTS FQMTNYSGMA SSVGRPPLSH TSSFKIRKCY SANGKCGGPS  240
GRCHCSKKRK TRLKRIVRVP AISAKMADIP PDDYSWRKYG QKPIKGSPHP RGYYKCSTVR  300
GCPARKHVER ALDDPNMLVV TYEGEHNHSL SVVEASTLIL ESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-222683301576Probable WRKY transcription factor 4
2lex_A9e-222683301576Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021839232.10.0probable WRKY transcription factor 15
SwissprotQ9STX03e-81WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A0K9QLS30.0A0A0K9QLS3_SPIOL; Uncharacterized protein
STRINGXP_010679527.11e-159(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.19e-82WRKY DNA-binding protein 7