PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_164610_dect.t1
Common NameSOVF_164610
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bZIP
Protein Properties Length: 429aa    MW: 45719.9 Da    PI: 9.2929
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_164610_dect.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_168.98.3e-22285347163
                        XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                        e+elkrerrkq+NRe+ArrsR+RK+ae+eeL+++v++L+aeN+aLk+e++ l ++++kl+ e+
  Sp_164610_dect.t1 285 ERELKRERRKQSNRESARRSRLRKQAETEELARRVESLSAENMALKSEVNLLVENSQKLRLEN 347
                        89*********************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.2E-32193IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165962.3E-25130254No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-16278344No hitNo description
PfamPF001707.4E-20285347IPR004827Basic-leucine zipper domain
SMARTSM003381.8E-20285349IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.978287350IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.06E-10288344No hitNo description
CDDcd147021.89E-20290344No hitNo description
PROSITE patternPS000360292307IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MGSSDNVKSP KSEKTSPPAT EHNGVHMYPD WAAMQAYYGP RVALPPYFNS AVAPGHPPPP  60
YMWGPPQPMV PPYGAPYAAI YAPGGVYAHP AIPLASQAHG QEVAPPAVSE PLVATPLSMD  120
TPAKSPKNAD KGFIKKLKGF NGLAMSIGNG NTEKTEGDVE NRLSQSAESE GSSNGSDGNY  180
TEDADDNKRK RSREGTPISV EAEKTEIKAV LPPPADKVLG IPVTSANAVA GQVMGTVVSP  240
GVATTLELRN PGVTVKGNSS PVSSPNGVVS SEAWLQTQPV QTQNERELKR ERRKQSNRES  300
ARRSRLRKQA ETEELARRVE SLSAENMALK SEVNLLVENS QKLRLENAAL TGKLKNLQSG  360
QGDENGLANV DTKRNPSDST ENLLSRVNNS SSVGRNSDEG AEMFGKSAKS GAKFHQLLDN  420
RRGDAVAAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1301307RRSRLRK
2301308RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2236240.0AJ223624.1 Spinacia oleracea mRNA for basic leucine zipper protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021850808.10.0common plant regulatory factor 1-like
SwissprotQ990891e-130CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLA0A0K9QNP90.0A0A0K9QNP9_SPIOL; Uncharacterized protein
STRINGXP_010669464.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.13e-71G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]