PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_163550_pjai.t2 | ||||||||
Common Name | SOVF_163550 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 253aa MW: 28877.7 Da PI: 8.0185 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.9 | 1.5e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++ rqvtfskRr+g+lKKA+ELS+LCdae+a+i+fss+gklye+ss Sp_163550_pjai.t2 9 KRIENNISRQVTFSKRRTGLLKKAKELSILCDAEIALIVFSSRGKLYEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 68.1 | 3e-23 | 88 | 165 | 6 | 83 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 + ++ ea+++s+ qe+a L++++e+L+r qRh+lGe+L++LslkeLq+Le+qLe++l + R++K++ l + +el+ + Sp_163550_pjai.t2 88 QDHAMEAQTQSWLQEIAHLESQYESLKRAQRHMLGEELGTLSLKELQSLEKQLEEALARTRARKERKLGDLNKELKLR 165 33378999************************************************************9999999877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.562 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.9E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.04E-40 | 2 | 73 | No hit | No description |
SuperFamily | SSF55455 | 1.44E-31 | 2 | 87 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 5.8E-18 | 94 | 163 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.285 | 96 | 184 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048437 | Biological Process | floral organ development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MGRGKVELKR IENNISRQVT FSKRRTGLLK KAKELSILCD AEIALIVFSS RGKLYEFSSI 60 ECLPKTLDRY QRCGNNIDLH HHHHHHHQDH AMEAQTQSWL QEIAHLESQY ESLKRAQRHM 120 LGEELGTLSL KELQSLEKQL EEALARTRAR KERKLGDLNK ELKLRVGDQG HGFNRPILDS 180 NVCIPFIHPS HSTCFDYDPA GLHIGSYKPE PVVLEIGYPP QYASHEEEGP SNGSQRASLG 240 SHTTNFHQAG WLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-18 | 1 | 70 | 1 | 69 | MEF2C |
5f28_B | 2e-18 | 1 | 70 | 1 | 69 | MEF2C |
5f28_C | 2e-18 | 1 | 70 | 1 | 69 | MEF2C |
5f28_D | 2e-18 | 1 | 70 | 1 | 69 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00315 | DAP | Transfer from AT2G45650 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021856535.1 | 1e-178 | truncated transcription factor CAULIFLOWER A | ||||
Swissprot | Q8LLR1 | 4e-69 | MADS3_VITVI; Agamous-like MADS-box protein MADS3 | ||||
TrEMBL | A0A0K9QP30 | 0.0 | A0A0K9QP30_SPIOL; Uncharacterized protein | ||||
STRING | XP_010692324.1 | 1e-155 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45650.1 | 2e-55 | AGAMOUS-like 6 |
Publications ? help Back to Top | |||
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