PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_163550_pjai.t1 | ||||||||
Common Name | SOVF_163550 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 267aa MW: 30523.6 Da PI: 8.0185 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.8 | 1.6e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++ rqvtfskRr+g+lKKA+ELS+LCdae+a+i+fss+gklye+ss Sp_163550_pjai.t1 9 KRIENNISRQVTFSKRRTGLLKKAKELSILCDAEIALIVFSSRGKLYEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 85.5 | 1.1e-28 | 88 | 179 | 6 | 97 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 + ++ ea+++s+ qe+a L++++e+L+r qRh+lGe+L++LslkeLq+Le+qLe++l + R++K +l++eq+e l++ e++l + nk+L+ + Sp_163550_pjai.t1 88 QDHAMEAQTQSWLQEIAHLESQYESLKRAQRHMLGEELGTLSLKELQSLEKQLEEALARTRARKAQLMTEQMEALRRSERKLGDLNKELKLR 179 33378999********************************************************************************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.562 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.9E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.46E-40 | 2 | 73 | No hit | No description |
SuperFamily | SSF55455 | 1.57E-31 | 2 | 87 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.0E-25 | 94 | 179 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.065 | 96 | 186 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048437 | Biological Process | floral organ development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MGRGKVELKR IENNISRQVT FSKRRTGLLK KAKELSILCD AEIALIVFSS RGKLYEFSSI 60 ECLPKTLDRY QRCGNNIDLH HHHHHHHQDH AMEAQTQSWL QEIAHLESQY ESLKRAQRHM 120 LGEELGTLSL KELQSLEKQL EEALARTRAR KAQLMTEQME ALRRSERKLG DLNKELKLRV 180 GDQGHGFNRP ILDSNVCIPF IHPSHSTCFD YDPAGLHIGS YKPEPVVLEI GYPPQYASHE 240 EEGPSNGSQR ASLGSHTTNF HQAGWLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-18 | 1 | 70 | 1 | 69 | MEF2C |
5f28_B | 3e-18 | 1 | 70 | 1 | 69 | MEF2C |
5f28_C | 3e-18 | 1 | 70 | 1 | 69 | MEF2C |
5f28_D | 3e-18 | 1 | 70 | 1 | 69 | MEF2C |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 144 | 152 | ARTRARKAQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00315 | DAP | Transfer from AT2G45650 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021856535.1 | 0.0 | truncated transcription factor CAULIFLOWER A | ||||
Swissprot | Q8LLR1 | 7e-80 | MADS3_VITVI; Agamous-like MADS-box protein MADS3 | ||||
TrEMBL | A0A0K9QM32 | 0.0 | A0A0K9QM32_SPIOL; Uncharacterized protein | ||||
STRING | XP_010692324.1 | 1e-168 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45650.1 | 4e-65 | AGAMOUS-like 6 |
Publications ? help Back to Top | |||
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