PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_163550_pjai.t1
Common NameSOVF_163550
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MIKC_MADS
Protein Properties Length: 267aa    MW: 30523.6 Da    PI: 8.0185
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_163550_pjai.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.81.6e-29959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       krien++ rqvtfskRr+g+lKKA+ELS+LCdae+a+i+fss+gklye+ss
  Sp_163550_pjai.t1  9 KRIENNISRQVTFSKRRTGLLKKAKELSILCDAEIALIVFSSRGKLYEFSS 59
                       79***********************************************96 PP

2K-box85.51.1e-2888179697
              K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                        + ++ ea+++s+ qe+a L++++e+L+r qRh+lGe+L++LslkeLq+Le+qLe++l + R++K +l++eq+e l++ e++l + nk+L+ +
  Sp_163550_pjai.t1  88 QDHAMEAQTQSWLQEIAHLESQYESLKRAQRHMLGEELGTLSLKELQSLEKQLEEALARTRARKAQLMTEQMEALRRSERKLGDLNKELKLR 179
                        33378999********************************************************************************9865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.562161IPR002100Transcription factor, MADS-box
SMARTSM004328.9E-39160IPR002100Transcription factor, MADS-box
CDDcd002651.46E-40273No hitNo description
SuperFamilySSF554551.57E-31287IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-303859IPR002100Transcription factor, MADS-box
PfamPF014864.0E-2594179IPR002487Transcription factor, K-box
PROSITE profilePS5129715.06596186IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048437Biological Processfloral organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MGRGKVELKR IENNISRQVT FSKRRTGLLK KAKELSILCD AEIALIVFSS RGKLYEFSSI  60
ECLPKTLDRY QRCGNNIDLH HHHHHHHQDH AMEAQTQSWL QEIAHLESQY ESLKRAQRHM  120
LGEELGTLSL KELQSLEKQL EEALARTRAR KAQLMTEQME ALRRSERKLG DLNKELKLRV  180
GDQGHGFNRP ILDSNVCIPF IHPSHSTCFD YDPAGLHIGS YKPEPVVLEI GYPPQYASHE  240
EEGPSNGSQR ASLGSHTTNF HQAGWLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-18170169MEF2C
5f28_B3e-18170169MEF2C
5f28_C3e-18170169MEF2C
5f28_D3e-18170169MEF2C
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144152ARTRARKAQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00315DAPTransfer from AT2G45650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021856535.10.0truncated transcription factor CAULIFLOWER A
SwissprotQ8LLR17e-80MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLA0A0K9QM320.0A0A0K9QM32_SPIOL; Uncharacterized protein
STRINGXP_010692324.11e-168(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.14e-65AGAMOUS-like 6
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]