PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_163300_egro.t1
Common NameSOVF_163300
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C2H2
Protein Properties Length: 438aa    MW: 47819.6 Da    PI: 9.9161
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_163300_egro.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-05200222223
                        EETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                         Cp+Cg++F+  ++L++H+ + H
  Sp_163300_egro.t1 200 ACPHCGEVFPKIESLEHHQAVrH 222
                        6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.642199227IPR007087Zinc finger, C2H2
PROSITE patternPS000280199222IPR007087Zinc finger, C2H2
SuperFamilySSF563991.15E-22224434No hitNo description
Gene3DG3DSA:3.90.228.106.0E-6226342IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene3DG3DSA:3.90.228.104.3E-5354433IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MTPLLGLIFM GILTFIPPDS SASKPTKQPR KQHHHKTEPQ QQQQQQQPKP KSKSKPKPKP  60
KPKQASSWDQ IKNLLTCKQV EGSRVHDPSK PAVSSSCGSM CSFRDVVHGN TRVVHRSDNS  120
SPESSSLGQE ARLLHRRKTG PGSVSSRSLS GSVRSGTSVT TTHSVSSRGM PLRKLSGCYE  180
CHMIVDPSRY PIIPRSTVCA CPHCGEVFPK IESLEHHQAV RHAVSELGPE DSGRNIVEII  240
FKSSWLKKDN PICKIERILK VENTQRTIQR FEDCRDMVKL RANNNTKKNP RCAADGNELL  300
RFHCTTLTCS LGARASSNLC GSVPGCGVCT IIRHGFQGNK GVRTTASSGK AHDSLLDCTD  360
GRKAMLVCRV IAGRVKRSAN DAPAEEEIMS LDGQSGNTTY DSVAGSSGIY SSLEDLVVTN  420
PKAILPCFVV IYKTLTTT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021863335.10.0uncharacterized protein LOC110802205
TrEMBLA0A0K9QM510.0A0A0K9QM51_SPIOL; Uncharacterized protein
STRINGXP_010695422.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-163C2H2-like zinc finger protein