PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_162160_ztxp.t1
Common NameSOVF_162160
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MIKC_MADS
Protein Properties Length: 227aa    MW: 25464.2 Da    PI: 8.4466
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_162160_ztxp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.11.8e-26959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       k+i+n + rqvtfskRr gi+KKAeELSvLCda++a+i+fs  gkl+++ss
  Sp_162160_ztxp.t1  9 KKIDNITARQVTFSKRRRGIFKKAEELSVLCDADIALIVFSAPGKLFDFSS 59
                       68***********************************************96 PP
2K-box34.86.7e-13911711898
              K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                        + +l kL  e+ +  +++R+l GedL+   l+eL +Le+ Le+sl+++ ++K + ++ +ie+lqk+ + l een +L++++
  Sp_162160_ztxp.t1  91 NSNLGKLSIEVAEKNKQLRKLRGEDLQGVGLEELLELERMLEDSLTRVLDTKGKRIKHEIETLQKQGDLLMEENLKLKQNM 171
                        445556666666667999***********************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.2E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.931161IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.28E-30388IPR002100Transcription factor, MADS-box
PfamPF003192.0E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-253859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.51287178IPR002487Transcription factor, K-box
PfamPF014862.8E-1191170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000060Biological Processprotein import into nucleus, translocation
GO:0009739Biological Processresponse to gibberellin
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010220Biological Processpositive regulation of vernalization response
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MAREKIKIKK IDNITARQVT FSKRRRGIFK KAEELSVLCD ADIALIVFSA PGKLFDFSSS  60
RMGDILSRYT TQSKNEKKRS EVPFLQLQLE NSNLGKLSIE VAEKNKQLRK LRGEDLQGVG  120
LEELLELERM LEDSLTRVLD TKGKRIKHEI ETLQKQGDLL MEENLKLKQN MIALSQAGTP  180
VLLLDQSATS TIHEEGQYSS ESISNGAPPA IEDDSSNTSL KLGLSLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-19186186MEF2 CHIMERA
6byy_B2e-19186186MEF2 CHIMERA
6byy_C2e-19186186MEF2 CHIMERA
6byy_D2e-19186186MEF2 CHIMERA
6bz1_A2e-19186186MEF2 CHIMERA
6bz1_B2e-19186186MEF2 CHIMERA
6bz1_C2e-19186186MEF2 CHIMERA
6bz1_D2e-19186186MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021860151.11e-161MADS-box protein AGL24 isoform X2
SwissprotQ9FUY64e-75JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A0K9QMI81e-161A0A0K9QMI8_SPIOL; Uncharacterized protein
STRINGXP_010675143.11e-112(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.12e-62AGAMOUS-like 24
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]