PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_161730_oeip.t1 | ||||||||
Common Name | SOVF_161730 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | NAC | ||||||||
Protein Properties | Length: 371aa MW: 41541.4 Da PI: 5.1606 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 96.7 | 3.6e-30 | 55 | 195 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..... 77 lp+G++F+P+d +l+ e+L++k+++ + + +e+i+++d i++++P++Lp + +++ ++ + F+k++++ya+g+rk+r+ Sp_161730_oeip.t1 55 LPAGVKFDPSDCQLL-EHLAAKCDAGEekphafI--DEFIPTLDmdkgICYTHPKHLPGA-TKDGSSFHIFHKTSNAYASGQRKRRKihnep 142 799************.99****998886665332..334666555566**********44.4567899******************845555 PP NAM 78 .tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +s +W++tgk+k++++ +g ++g+kk++v+y +++ +k+ k+dWvmh+y+l Sp_161730_oeip.t1 143 nEESVRWHKTGKTKAIFD-NGVQKGCKKIMVLYrsSQKGSKPLKSDWVMHQYHL 195 544999************.999***********4434566677*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-35 | 40 | 214 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 28.815 | 55 | 214 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.4E-12 | 56 | 195 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MAKTWIVDCK GIASKVRHAN LSSSVQIKDC GAKRECPNCH HWIDNSDVCN EWPGLPAGVK 60 FDPSDCQLLE HLAAKCDAGE EKPHAFIDEF IPTLDMDKGI CYTHPKHLPG ATKDGSSFHI 120 FHKTSNAYAS GQRKRRKIHN EPNEESVRWH KTGKTKAIFD NGVQKGCKKI MVLYRSSQKG 180 SKPLKSDWVM HQYHLGYEDD EKEGAFVVSK IFYQKPKQPE TDDSCVATVE ENTNAVATLY 240 CPKTPMVLTR NPPRENMLIA AEDEKCTKIE TCFPQSSSVY EGDVNNPPEH PAGESQAQDQ 300 DPDPNLNDID DPLFCNEIFS SCAPLDDSIS LNDLNGYIGY YDNLDNIHLD SLPEFTLADL 360 QFGSQDSTLG W |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021845054.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1-like | ||||
Swissprot | Q6NQK2 | 6e-82 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A0K9QMT0 | 0.0 | A0A0K9QMT0_SPIOL; Uncharacterized protein | ||||
STRING | XP_010686990.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01600.1 | 2e-91 | NAC domain containing protein 44 |