PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_160820_yjqt.t1
Common NameSOVF_160820
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 462aa    MW: 51301.6 Da    PI: 6.0805
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_160820_yjqt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.66.2e-10271318455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Sp_160820_yjqt.t1 271 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 318
                        8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.74E-10265322No hitNo description
SuperFamilySSF474596.94E-17265336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-17267334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.618267317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-7271318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-9273323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MLHYLNTPAN VIGVKGMEMS VLERQKMVLK WQQEQLFQVQ TTQQQQLSCF NDLSMLSFFP  60
AEAHDFHGAD MNYGPSSVTT GPTLNELLNR PIKADPGGEN GWMDFGMPKS GVNVGSLGIE  120
TAEQIHNSPG YEMNYGISRT ASCPPSVAEA AEATVKAARD AKGRESLLSD QKLNGAAGRE  180
SFKKRKAEKN LRTPKIVDTE EDNKSKKSKG CAEEEESKIT EQHSNSSHNQ KESNGNNNDK  240
KNKENSGCTS KDNSKHDYIH VRARRGQATD SHSLAERVRR EKISERMKYL QDLVPGCNKI  300
TGKAGMLDEI INYVQSLQRQ VEFLSMKLAT VNPRLDFNID DLIAKEVFAA CSTSIPALGV  360
SPDLNNPSYL QYNPIEQMDP VCGSTVAVNP IDLGLKRSIS APVSIPETFF DTSCFNQIPN  420
SLQWDAELQN IYNMEFQQGR QPSFPVQTFT GTIESSSLKM EM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021864214.10.0transcription factor HBI1-like
TrEMBLA0A0K9QN270.0A0A0K9QN27_SPIOL; Uncharacterized protein
STRINGXP_010690861.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.11e-62cryptochrome-interacting basic-helix-loop-helix 1