PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_160800_orsp.t1 | ||||||||
Common Name | SOVF_160800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | MYB_related | ||||||||
Protein Properties | Length: 95aa MW: 10952.1 Da PI: 9.6294 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.4 | 3.4e-08 | 15 | 58 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT+ +++ +a +++ ++ +W +ar + g+++ ++k ++ Sp_160800_orsp.t1 15 SWTAKQNKQFERALALYDTDtkdRWQNVARLVE-GKSADEVKRHY 58 7********************************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.116 | 11 | 66 | IPR017884 | SANT domain |
SMART | SM00717 | 3.9E-6 | 12 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-5 | 15 | 68 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.6E-6 | 15 | 58 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.64E-12 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.36E-6 | 16 | 62 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 95 aa Download sequence Send to blast |
MASGSISSSR NINSSWTAKQ NKQFERALAL YDTDTKDRWQ NVARLVEGKS ADEVKRHYEI 60 LLEDLNRIEA GRVPIPNYRQ SSGNSMNFNQ EQRHP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-33 | 6 | 84 | 1 | 79 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021864236.1 | 1e-65 | protein RADIALIS-like 3 | ||||
Swissprot | Q58FS3 | 5e-33 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | A0A0K9QN26 | 2e-64 | A0A0K9QN26_SPIOL; Uncharacterized protein (Fragment) | ||||
STRING | XP_010690864.1 | 3e-46 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 2e-32 | RAD-like 1 |
Publications ? help Back to Top | |||
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