PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_160770_xczo.t2
Common NameSOVF_160770
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ARR-B
Protein Properties Length: 584aa    MW: 64996.1 Da    PI: 6.5538
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_160770_xczo.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.31.4e-27201255155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        kpr++W+ eLH++Fv av+qLG + +A+Pk+ilelm+v+ Lt+e+v+SHLQkYRl
  Sp_160770_xczo.t2 201 KPRVVWSVELHRKFVAAVNQLGLETEAVPKKILELMNVDKLTRENVASHLQKYRL 255
                        79****************************************************8 PP
2Response_reg75.91.5e-25201281109
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        vl vdD+p+ + ll ++l+k +y +v+++ ++  al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++++g+++++ + +
  Sp_160770_xczo.t2  20 VLAVDDNPICLTLLDSLLRKCKY-HVTTTNQAITALKMLRENKnkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSGNGDPKLVMKGI 109
                        799********************.***************888888*******************87754.558******************* PP

                        HTTESEEEESS--HHHHHH CS
       Response_reg  91 kaGakdflsKpfdpeelvk 109
                          Ga d+l Kp+  eel +
  Sp_160770_xczo.t2 110 THGACDYLLKPVRLEELKN 128
                        ****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.2E-1601574IPR017053Response regulator B-type, plant
SuperFamilySSF521728.11E-3517140IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23008.5E-4217153No hitNo description
SMARTSM004486.4E-3118130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.27519134IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.6E-2320128IPR001789Signal transduction response regulator, receiver domain
CDDcd001569.94E-2721134No hitNo description
Gene3DG3DSA:1.10.10.601.7E-29198260IPR009057Homeodomain-like
PROSITE profilePS5129411.799198258IPR017930Myb domain
SuperFamilySSF466891.97E-18199259IPR009057Homeodomain-like
TIGRFAMsTIGR015575.2E-25201255IPR006447Myb domain, plants
PfamPF002493.1E-7203254IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MTVEERRDEA NDQFPIGMRV LAVDDNPICL TLLDSLLRKC KYHVTTTNQA ITALKMLREN  60
KNKFDLVISD VHMPDMDGFK LLELVGLEMD LPVIMLSGNG DPKLVMKGIT HGACDYLLKP  120
VRLEELKNIW QHVIRKKKVD PKDRDNSNNQ DNNSSEGNGV RGANCDQDVK FCRKRKDQNL  180
DDDEDEDEDE NENEDPSAQK KPRVVWSVEL HRKFVAAVNQ LGLETEAVPK KILELMNVDK  240
LTRENVASHL QKYRLYLKRI SAVANQQANM AAAFGGPDYL RMNAVNFHGF NGSPQFHNTL  300
RPIPPPGVLG RLNTPAGMGL HGLPPSGLVQ LTHPQTQTHT QNPPPSITDS TKFHPNLFGG  360
DHTGTVLQGM PTSLEYDQLH KNNTILSNSN NNSILSLPNS SLTMQGRCSQ ERQNLDGYGV  420
GTSTSPPNLL DHNRCNTNWP AAVQSQPNPM NSMDNDIIIS PNISIQNHSN MMQNMSYGTK  480
QVWDADFLDG SVNSPVAGTQ SAYDPRSMSS RNTTGYHLMG QPRFDHSLAP QHDQMFRNSA  540
VDMNIKMKQG MFMEQGGRPL GNYTTTGNGA GSLEDVVTAM FKQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-24197261164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021857063.10.0two-component response regulator ARR12-like isoform X1
SwissprotA2X1N21e-140ORR24_ORYSI; Two-component response regulator ORR24
TrEMBLA0A0K9QN180.0A0A0K9QN18_SPIOL; Two-component response regulator
STRINGXP_010665924.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-121response regulator 12