PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_160770_xczo.t1 | ||||||||
Common Name | SOVF_160770 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | ARR-B | ||||||||
Protein Properties | Length: 583aa MW: 64894.1 Da PI: 6.732 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89.6 | 2.8e-28 | 201 | 254 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G ekA+Pk+ilelm+v+ Lt+e+v+SHLQkYRl Sp_160770_xczo.t1 201 KPRVVWSVELHRKFVAAVNQL-GLEKAVPKKILELMNVDKLTRENVASHLQKYRL 254 79*******************.********************************8 PP | |||||||
2 | Response_reg | 75.9 | 1.5e-25 | 20 | 128 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 vl vdD+p+ + ll ++l+k +y +v+++ ++ al++l+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++++g+++++ + + Sp_160770_xczo.t1 20 VLAVDDNPICLTLLDSLLRKCKY-HVTTTNQAITALKMLRENKnkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSGNGDPKLVMKGI 109 799********************.***************888888*******************87754.558******************* PP HTTESEEEESS--HHHHHH CS Response_reg 91 kaGakdflsKpfdpeelvk 109 Ga d+l Kp+ eel + Sp_160770_xczo.t1 110 THGACDYLLKPVRLEELKN 128 ****************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 2.4E-163 | 1 | 573 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 8.11E-35 | 17 | 140 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 8.5E-42 | 17 | 153 | No hit | No description |
SMART | SM00448 | 6.4E-31 | 18 | 130 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.275 | 19 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 5.6E-23 | 20 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 9.87E-27 | 21 | 134 | No hit | No description |
PROSITE profile | PS51294 | 11.823 | 198 | 257 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-30 | 198 | 259 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.85E-20 | 199 | 258 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.5E-25 | 201 | 254 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.5E-7 | 203 | 253 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 583 aa Download sequence Send to blast |
MTVEERRDEA NDQFPIGMRV LAVDDNPICL TLLDSLLRKC KYHVTTTNQA ITALKMLREN 60 KNKFDLVISD VHMPDMDGFK LLELVGLEMD LPVIMLSGNG DPKLVMKGIT HGACDYLLKP 120 VRLEELKNIW QHVIRKKKVD PKDRDNSNNQ DNNSSEGNGV RGANCDQDVK FCRKRKDQNL 180 DDDEDEDEDE NENEDPSAQK KPRVVWSVEL HRKFVAAVNQ LGLEKAVPKK ILELMNVDKL 240 TRENVASHLQ KYRLYLKRIS AVANQQANMA AAFGGPDYLR MNAVNFHGFN GSPQFHNTLR 300 PIPPPGVLGR LNTPAGMGLH GLPPSGLVQL THPQTQTHTQ NPPPSITDST KFHPNLFGGD 360 HTGTVLQGMP TSLEYDQLHK NNTILSNSNN NSILSLPNSS LTMQGRCSQE RQNLDGYGVG 420 TSTSPPNLLD HNRCNTNWPA AVQSQPNPMN SMDNDIIISP NISIQNHSNM MQNMSYGTKQ 480 VWDADFLDGS VNSPVAGTQS AYDPRSMSSR NTTGYHLMGQ PRFDHSLAPQ HDQMFRNSAV 540 DMNIKMKQGM FMEQGGRPLG NYTTTGNGAG SLEDVVTAMF KQS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-26 | 197 | 260 | 1 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021857064.1 | 0.0 | two-component response regulator ARR12-like isoform X2 | ||||
Swissprot | A2X1N2 | 1e-142 | ORR24_ORYSI; Two-component response regulator ORR24 | ||||
TrEMBL | A0A0K9QPN0 | 0.0 | A0A0K9QPN0_SPIOL; Two-component response regulator | ||||
STRING | XP_010665924.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-123 | response regulator 12 |