PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_159770_euox.t1
Common NameSOVF_159770
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 489aa    MW: 53555.6 Da    PI: 7.9588
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_159770_euox.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.41.9e-16286332455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hn+ ErrRRdriN+++  L++l+P+a      K +Ka++L +++eY+k+Lq
  Sp_159770_euox.t1 286 VHNQSERRRRDRINQKMKALQKLVPNA-----SKTDKASMLDEVIEYLKQLQ 332
                        6*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-19280349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.79282331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-19284341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-14286332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.62E-17287336No hitNo description
SMARTSM003531.1E-17288337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MSQCMVPNWN LSHQRQDLNN QAEEGNRSSH VDLASSHHSH FQQHHQHQSF SQLVPMSNFE  60
VAELTWENGQ LAMHELGGIF PGPTTTTPAK PAWGGGVGRV TDTLESIVHQ ATYCNNKQTP  120
KLMLTSVPHQ PQTGHQSVKN VGSSVVASSG GKWAENSGHI QQTPVVGPPP PPLPGLVKKR  180
TRSESEHCAP RNNNNDHEMS ACASANAAFC KDSSNNNTNN NNNTNNDTTM MTWASFESPR  240
SCTRTKTTTD EDSACHDGSE NQEEDRDTKG ETGRSYTTRK GRAAAVHNQS ERRRRDRINQ  300
KMKALQKLVP NASKTDKASM LDEVIEYLKQ LQAQVQMMSN ARFMPQIMMP LGMQQHFHQM  360
SLLARMGMGA GLGMGMGMLD TSSMGAAHPA SQAIPSMIHP TQVATTASAF VPPAFVVPQM  420
IPGSSQQPNS VDPGTSSSAP LQDPYSTLLA QSMNIDLYNR MAALQRQQQT SSQQTNNPLQ  480
SNHHHVQRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1290295ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021860872.10.0transcription factor PIF7-like isoform X1
TrEMBLA0A0K9QNE10.0A0A0K9QNE1_SPIOL; Uncharacterized protein
STRINGXP_010678431.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.14e-33bHLH family protein