PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_159000_angt.t1
Common NameSOVF_159000
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family TALE
Protein Properties Length: 577aa    MW: 64131.2 Da    PI: 6.9364
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_159000_angt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.21.6e-093533901954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yp+ +e+  LA+++gLt +qV +WF N R +
  Sp_159000_angt.t1 353 FEHflHPYPKDSEKIMLARQTGLTRSQVANWFINARVR 390
                        664559******************************88 PP
2BELL122.12.3e-39219290172
               BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        erqelq+k  kL s+l+eVd+rYkqy++q+q+++ssF++vag g+akpYt+lAlk+iSrhFrcL+dai++qi
  Sp_159000_angt.t1 219 ERQELQNKLDKLHSMLDEVDRRYKQYCQQMQILVSSFDVVAGAGAAKPYTTLALKTISRHFRCLRDAITNQI 290
                        79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.5E-56145288IPR006563POX domain
PfamPF075262.4E-50151287IPR006563POX domain
PROSITE profilePS5007112.195331394IPR001356Homeobox domain
SMARTSM003897.0E-10334398IPR001356Homeobox domain
CDDcd000863.82E-12334395No hitNo description
SuperFamilySSF466891.45E-17335401IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-28337400IPR009057Homeodomain-like
PfamPF059201.9E-17351390IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MCIQSMSENV GNSLPGELQL TSRSQMSMVD GEQNLQGLSL SLSTQMSTAV STSPFQYQYT  60
SPGVGLSSVL SPHLPLSAEN NVRPMSCKVD EASPNKDIRN SDYFAYEIQG EGHNNSNNNN  120
NIRFGVLNNP QYSINQKAMY QYEQAGMSST LNKSKYLKAA QLLLDEVVNV RDALKRSDSG  180
KEQSPRKVDE GSKESKGGSQ AASEANESGS SSQELSPAER QELQNKLDKL HSMLDEVDRR  240
YKQYCQQMQI LVSSFDVVAG AGAAKPYTTL ALKTISRHFR CLRDAITNQI QATRKILGEQ  300
DNGPGGVIPR LRYVDQQLRQ QRALQQFGMM RHAWRPQRGL PESAVTILRA WLFEHFLHPY  360
PKDSEKIMLA RQTGLTRSQV ANWFINARVR LWKPMVEEMY KEEFGEAELM NSRCSPENTP  420
KLAREKSWGS EDRREEMQES STSIAHDAHD SKVNVNQGIG ALGNGNDSHG FYSNNGTLSS  480
PDPNGGGHGH GHGHGHSHLM VNPAAYQISE MGSFSVDNQV SLALGLRHRE GDVTFRGNTT  540
TEANMGVATS DYNPYLEQVN QQHRFGNPSH ILNDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16340398563Homeobox protein Meis2
3k2a_B2e-16340398563Homeobox protein Meis2
4xrs_A2e-16340397158Homeobox protein Meis1
4xrs_B2e-16340397158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:16513846}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021851052.10.0BEL1-like homeodomain protein 3
RefseqXP_021851053.10.0BEL1-like homeodomain protein 3
SwissprotQ9FWS91e-116BLH3_ARATH; BEL1-like homeodomain protein 3
TrEMBLA0A0K9QQ740.0A0A0K9QQ74_SPIOL; Uncharacterized protein
STRINGXP_010672737.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.11e-105BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]