PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_158990_xngr.t1
Common NameSOVF_158990
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family HSF
Protein Properties Length: 377aa    MW: 42669.9 Da    PI: 4.5911
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_158990_xngr.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.82.6e-36141042101
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k ye+++d++++++iswse+++sfv++d+++f++++Lp+yFkh+nf+SF+RQLn+YgF+kv++++         weF+++ F kg+k+l
  Sp_158990_xngr.t1  14 FLTKCYEMVDDQSTNSIISWSESNDSFVIWDMTKFSRDLLPTYFKHRNFSSFMRQLNIYGFRKVDTDS---------WEFANEGFIKGQKHL 96 
                        9****************************************************************998.........*************** PP

                        XXXXXXXX CS
       HSF_DNA-bind  94 lekikrkk 101
                        l++ikr+k
  Sp_158990_xngr.t1  97 LNNIKRRK 104
                        ******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.6E-5610103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.9E-3411103IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.6E-3712103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.8E-181437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.7E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-185264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-186577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MTKSSHNGSI LAPFLTKCYE MVDDQSTNSI ISWSESNDSF VIWDMTKFSR DLLPTYFKHR  60
NFSSFMRQLN IYGFRKVDTD SWEFANEGFI KGQKHLLNNI KRRKYPHSSA QQNPQPDQQI  120
GIPDELDYSS LQKEVEILKT DKSSLMQELV KLRGHQESSQ NMLNILGERL QGMENNQQQL  180
LSFLVMVMQS PGLLVQLLQP KESGWRVAEA GKIILDHGTS CGNTPIQDGM IVRYQPLPDD  240
APSPTLTTSL DSVKTVKHDI SFDGVKDFFR NFDLPSSPLD ESFLSSDNCG SDLDFAKLEQ  300
FLLSSPARDD PQPDGQESLA TEREMELALY GVQLEDSEMR SPSSYFETDQ HSPILEILTE  360
KMECLSPGNK VLGNAGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-241410329129Heat shock factor protein 1
5d5v_B4e-241410329129Heat shock factor protein 1
5d5v_D4e-241410329129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021843219.10.0heat stress transcription factor A-8
TrEMBLA0A0K9QQP20.0A0A0K9QQP2_SPIOL; Uncharacterized protein
STRINGXP_006469269.11e-104(Citrus sinensis)
STRINGEMJ239511e-103(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.18e-85heat shock transcription factor A8