PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_158970_kqfu.t1
Common NameSOVF_158970
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C2H2
Protein Properties Length: 147aa    MW: 16458.9 Da    PI: 8.6742
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_158970_kqfu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.7e-054769123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C+ C+k Fs+   L  H++ H
  Sp_158970_kqfu.t1 47 YTCNFCKKGFSNAQALGGHMNIH 69
                       9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.4E-64571IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.89E-74573No hitNo description
PROSITE profilePS5015711.5524774IPR007087Zinc finger, C2H2
SMARTSM003550.0054769IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051973Biological Processpositive regulation of telomerase activity
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MELSLQQHET KSGKFNEQQT SSRSTTTTED QEAAAVLYSD EYYVRSYTCN FCKKGFSNAQ  60
ALGGHMNIHR RDRAKLRDEL STDDYSPTHS DLSTSKTRSS RLYVSKESRT KDDIWVGNGN  120
KHEALALFVD SSSSSRKAGS SSSRVVT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021840313.11e-103transcriptional regulator TAC1-like
RefseqXP_021856978.11e-103transcriptional regulator TAC1-like
TrEMBLA0A0K9QQ791e-104A0A0K9QQ79_SPIOL; Uncharacterized protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.12e-16C2H2 family protein