PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_155820_caso.t1 | ||||||||
Common Name | SOVF_155820 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | TCP | ||||||||
Protein Properties | Length: 455aa MW: 47534.5 Da PI: 7.7119 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 121.6 | 8.9e-38 | 89 | 266 | 2 | 121 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s + Sp_155820_caso.t1 89 APKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSLSVPsqlr 180 789*****************************************************************998887777777777444446666 PP TCP 89 .....................................................kaaksaakskksqksaasalnlakesrakarar 121 ++++ a++++++++++++++n ++ + +++ + Sp_155820_caso.t1 181 ssssyfspnfttaasasrrnffagiglssdtspssallnfqtatlnlnpgllqAKQECATSTSHPHHHQHHHNNSNDAGSPNSNNN 266 66778888888888899999999999999999999999998877766666654222222222222222222222222111111111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.8E-39 | 93 | 295 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.923 | 95 | 149 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010029 | Biological Process | regulation of seed germination | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 455 aa Download sequence Send to blast |
MDGDHQQQQQ QQQHHHHLEF HNHHRPNFPF QLLEKKEEEA CSSSTPFNAS LAITPSGPGP 60 STSAGPPQIT QPPGGGGESS SGPNSKKLAP KRTSTKDRHT KVDGRGRRIR MPALCAARVF 120 QLTRELGHKS DGETIEWLLQ QAEPAVIAAT GTGTIPANFT SLNISLRSSG SSLSVPSQLR 180 SSSSYFSPNF TTAASASRRN FFAGIGLSSD TSPSSALLNF QTATLNLNPG LLQAKQECAT 240 STSHPHHHQH HHNNSNDAGS PNSNNNNNSQ NNSNNNNQLD LSEAADDGGG GRKRRLEGEY 300 GAAAAAGAGG YGQYPNFWMV TNGGNQGAAA AAVMSGDPIW TIPSVNNSAA AGLYRGSVPS 360 GLHFMNFAAP MTLLPSQQLG PTMSSGAGNG GGGGGGGGHN TMSPGEQAQH LGLLTGLNPY 420 RNVQQGGGMS DSQASGSHSH HGDDRHDTTS HSHHS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00396 | DAP | Transfer from AT3G47620 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021860188.1 | 0.0 | transcription factor TCP14 | ||||
TrEMBL | A0A0K9QR91 | 0.0 | A0A0K9QR91_SPIOL; Uncharacterized protein | ||||
STRING | XP_010695711.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69690.1 | 2e-44 | TCP family protein |