PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_155320_exug.t1
Common NameSOVF_155320
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family TALE
Protein Properties Length: 151aa    MW: 17596.7 Da    PI: 7.1827
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_155320_exug.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.43.2e-10781132055
                        HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
           Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                        +k +yps++e+  LA+ +gL+++q+ +WF N+R ++
  Sp_155320_exug.t1  78 YKWPYPSESEKVALAEATGLDQKQINNWFINQRKRH 113
                        5679*****************************985 PP
2ELK37.74.5e-133354122
                ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                       ELK++Ll+KYsgyL+sLkqE+s
  Sp_155320_exug.t1 33 ELKNHLLKKYSGYLSSLKQELS 54
                       9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011881.0E-63354IPR005539ELK domain
PROSITE profilePS5121311.2433353IPR005539ELK domain
PfamPF037892.2E-103354IPR005539ELK domain
PROSITE profilePS5007113.02153116IPR001356Homeobox domain
SuperFamilySSF466896.42E-2154129IPR009057Homeodomain-like
SMARTSM003893.4E-1355120IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.6E-2858119IPR009057Homeodomain-like
CDDcd000861.75E-1265117No hitNo description
PfamPF059202.8E-1773112IPR008422Homeobox KN domain
PROSITE patternPS00027091114IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
DKSEGVGSSE EDQENSGGET ELSEIDPRAE DRELKNHLLK KYSGYLSSLK QELSKKKKKG  60
KLPKEARQKL LSWWELHYKW PYPSESEKVA LAEATGLDQK QINNWFINQR KRHWKPSEDM  120
QFMVMDGIHP HNPALYMDGH YMGDGPYRFG T
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021836777.11e-108homeotic protein knotted-1 isoform X2
SwissprotO041357e-90KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLA0A0J8BE841e-106A0A0J8BE84_BETVU; Uncharacterized protein
TrEMBLA0A0K9QPR31e-107A0A0K9QPR3_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010692662.11e-107(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.15e-74KNOTTED-like from Arabidopsis thaliana