PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_152090_niei.t2 | ||||||||
Common Name | SOVF_152090 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | GATA | ||||||||
Protein Properties | Length: 149aa MW: 15871.1 Da PI: 10.0765 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.2 | 2.2e-18 | 26 | 60 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ C+tt TplWR gp g+ktLCnaCG++y kk++ Sp_152090_niei.t2 26 CTDCQTTATPLWRGGPAGPKTLCNACGIKYHKKRR 60 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 4.3E-12 | 20 | 79 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.85E-13 | 21 | 60 | No hit | No description |
PROSITE profile | PS50114 | 12.426 | 24 | 55 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.6E-15 | 25 | 60 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.06E-11 | 25 | 60 | No hit | No description |
Pfam | PF00320 | 5.4E-16 | 26 | 60 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 26 | 51 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MLDLKEEQPC SVSESHSSSS ELLKRCTDCQ TTATPLWRGG PAGPKTLCNA CGIKYHKKRR 60 ALLGLDKSKI DKNNNKKKTN KSCGGGSSNS SGSSSSNGSE SRHGITSLKI KMMASGGIRQ 120 SGEKLRDKLG EVEQAAMLLM ALSYGSVYA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021855114.1 | 1e-104 | GATA transcription factor 16-like isoform X2 | ||||
TrEMBL | A0A0K9QQS0 | 1e-103 | A0A0K9QQS0_SPIOL; Uncharacterized protein | ||||
STRING | XP_010684625.1 | 9e-53 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 4e-25 | GATA transcription factor 16 |