PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_150880_xasf.t1

Common Name

SOVF_150880

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

TCP

Protein Properties

Length: 286aa MW: 32758.8 Da PI: 10.0121

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_150880_xasf.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	105.2	1e-32	119	265	2	134
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssaseceae 76 + kdrhski T+ g+R RR+Rls+++a+ fF Lqd LGfdk s t+eWLl q+k +i e+++ + Sp_150880_xasf.t1 119 TSNKDRHSKIKTAHGLRERRMRLSLQVARPFFNLQDILGFDKGSRTLEWLLMQSKSSIEEIAQRkqlqgsgrpsaasggggG---------- 200 568***********************************************************666654222211111110.......... PP TCP 77 sssssasnsssg..................kaaksaakskksqksaasalnlakesrakarararertrekmrikn 134 g k ++s+++ k+++++++ ++ + ke+r+ ar+ra+ rt e+m+ k+ Sp_150880_xasf.t1 201 -----------GdnggestpkkmmmmmkkkKGSSSSTCDKEDDDETKPKRTMTKEKRKVARERAKMRTLERMQSKE 265 ...........01122334455566777755556666777777788888*********************9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.7E-33	119	263	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	29.1	121	179	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
YLVDDLNPNN SKQQDFLPNH VFTTSYYHHH HHLPSPSIYN KINYDNFLSN HELEFLQQSF 60 DDSPILEEDD SNNKVEDLEI DEKVENNNVE MNHTTINSTT NSKTSVSRRC HVMKKKKKTS 120 NKDRHSKIKT AHGLRERRMR LSLQVARPFF NLQDILGFDK GSRTLEWLLM QSKSSIEEIA 180 QRKQLQGSGR PSAASGGGGG GDNGGESTPK KMMMMMKKKK GSSSSTCDKE DDDETKPKRT 240 MTKEKRKVAR ERAKMRTLER MQSKEDYHGI GSTQLPLSST NKLARL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021849528.1	1e-154	transcription factor TCP18-like
TrEMBL	A0A0K9QR90	0.0	A0A0K9QR90_SPIOL; Uncharacterized protein (Fragment)
STRING	XP_010695622.1	2e-72	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	6e-25	TCP family protein