PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_149860_xshn.t1 | ||||||||
Common Name | SOVF_149860 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | TCP | ||||||||
Protein Properties | Length: 368aa MW: 39417.6 Da PI: 6.4514 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 120 | 2.9e-37 | 51 | 163 | 1 | 89 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg... 88 +a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+ +d++tieWLlqqa+p+++++tgt++++a+++ + s + s+s+ s+g Sp_149860_xshn.t1 51 PAPKRTSSKDRHTKVDGRGRRIRMPAQCAARVFQLTKELGHRSDGETIEWLLQQAEPSVIAATGTGTIPANFTsLSLSVRRSGSTVSAGsht 142 589*******************************************************************8885333333333322222333 PP TCP 89 ....................k 89 + Sp_149860_xshn.t1 143 rpvgynnnyfgnnnfyvspsN 163 444444444455555555550 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.3E-36 | 56 | 173 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.684 | 58 | 112 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0010252 | Biological Process | auxin homeostasis | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0042023 | Biological Process | DNA endoreduplication | ||||
GO:0048467 | Biological Process | gynoecium development |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MEDDLHQNSN TSTFPLHLLS TPHDNNNKLD LTENHEQSTL QSGSPSGPKK PAPKRTSSKD 60 RHTKVDGRGR RIRMPAQCAA RVFQLTKELG HRSDGETIEW LLQQAEPSVI AATGTGTIPA 120 NFTSLSLSVR RSGSTVSAGS HTRPVGYNNN YFGNNNFYVS PSNWMGFSNM LMINAASDQL 180 SNHHPSRQIN LFPNSGLELS STPSATMLNL HPGGRDNGDT CRDSNCPPEE EDDDEEDRDQ 240 NLNQSRNLNV GLGSGHGPGS GNNSTTTTWA YPNTTTTTGT SSGNGTVASG LHFMNFVNSN 300 NNNNNNSNTS MGFLAGHPVV GGGGFDGQFG MFGGFNNGMR SVVPGTIIGS HTQQQERSNN 360 VDHGDASS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00224 | DAP | Transfer from AT1G69690 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021867481.1 | 0.0 | transcription factor TCP15-like | ||||
Swissprot | Q93Z00 | 1e-43 | TCP14_ARATH; Transcription factor TCP14 | ||||
TrEMBL | A0A0K9QRH0 | 0.0 | A0A0K9QRH0_SPIOL; Uncharacterized protein | ||||
STRING | XP_010683217.1 | 1e-136 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58100.1 | 6e-44 | TCP family protein |
Publications ? help Back to Top | |||
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