PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_148690_xaog.t1 | ||||||||
Common Name | SOVF_148690 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | TCP | ||||||||
Protein Properties | Length: 230aa MW: 25221.1 Da PI: 6.8025 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 106.6 | 3.9e-33 | 78 | 154 | 6 | 80 |
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa..sec.eaessss 80 ++++++hTkv+gR+RRvR++ +caar+F+L++eLG+ +d++tieWLl+ a+p+i+ +tgt++ +a + ++++sss Sp_148690_xaog.t1 78 SSTKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRTDGQTIEWLLRHAEPSIIRATGTGTVPAvaD-FtSPAKSSS 154 689*********************************************************77777321.122222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.4E-29 | 79 | 197 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.785 | 80 | 134 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MNHHEPPKVT MGSETTILSN HLSTSDQPQF ESPESQPSLP LSFSLPFPPM SITSSAAKST 60 TTTASTTTKL AVSRRRVSST KDRHTKVNGR GRRVRMPPLC AARIFQLTRE LGHRTDGQTI 120 EWLLRHAEPS IIRATGTGTV PAVADFTSPA KSSSTPAIAA LPLSIDNGWH FPSQTVGLEF 180 GYRHIPSFTA LLLQPDDGEL RMRQQHEGQD QDEEQGDPAD FAIAKEEDQN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021859588.1 | 1e-169 | transcription factor PCF1 | ||||
TrEMBL | A0A0K9QRN6 | 1e-168 | A0A0K9QRN6_SPIOL; Uncharacterized protein | ||||
STRING | XP_010684094.1 | 1e-64 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37000.1 | 3e-34 | TCP family protein |