PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_147860_royx.t1
Common NameSOVF_147860
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ARR-B
Protein Properties Length: 614aa    MW: 68998.8 Da    PI: 5.2189
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_147860_royx.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like74.21.8e-23189244155
            G2-like   1 kprlrWtpeLHerFveaveqLG.GsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        k+r++W+ eLH++Fv+av+qLG  s+k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Sp_147860_royx.t1 189 KARVVWAVELHQKFVKAVNQLGiDSDKIGPKKILDLMDVPWLTRENVASHLQKYRL 244
                        68*******************7447899***************************8 PP
2Response_reg791.6e-26211291109
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        vl+vdD+p+ +++l+++l+k  y ev+++  ++eal+ll++++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + +
  Sp_147860_royx.t1  21 VLVVDDDPTWLKILEKMLKKCCY-EVTTCGLAREALRLLRDRKdgFDIVISDVNMPDMDGFRLLEHVGLEM-DLPVIMMSVDGETSRVMKGV 110
                        89*********************.***************888889**********************6644.8******************* PP

                        HTTESEEEESS--HHHHHH CS
       Response_reg  91 kaGakdflsKpfdpeelvk 109
                        + Ga d+l Kp+ ++el +
  Sp_147860_royx.t1 111 QHGACDYLLKPIRMKELKN 129
                        ***************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363923.8E-1421586IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23007.7E-4418165No hitNo description
SuperFamilySSF521721.57E-3518140IPR011006CheY-like superfamily
SMARTSM004487.5E-3019131IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.61120135IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.5E-2321129IPR001789Signal transduction response regulator, receiver domain
CDDcd001569.69E-3022135No hitNo description
Gene3DG3DSA:1.10.10.604.7E-27186249IPR009057Homeodomain-like
SuperFamilySSF466891.7E-15187248IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-19189244IPR006447Myb domain, plants
PfamPF002491.8E-5191243IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MGMEHGFSTP RTDTFPAGLR VLVVDDDPTW LKILEKMLKK CCYEVTTCGL AREALRLLRD  60
RKDGFDIVIS DVNMPDMDGF RLLEHVGLEM DLPVIMMSVD GETSRVMKGV QHGACDYLLK  120
PIRMKELKNI WQHVLRKRMH DVRDIECFED RSGTDRSHDG PYGVDQSFLK KRKDVDNEKE  180
SSDPSSSKKA RVVWAVELHQ KFVKAVNQLG IDSDKIGPKK ILDLMDVPWL TRENVASHLQ  240
KYRLYLSRLR EEGKLESSKG GGMLNQDLLS PKESSGSFSL QNSSFGQQND ITSKYVYQGT  300
PVLPVQTVTS DPPENNPETE HIIPFSIENC ASHTSKNSQL SLNHTYGSMD MSKHPSFDSP  360
ASGQYPWNRD VPDHLTFEPE FKLQPKMESC TFNQPTVPVL QQHISSDSPE QHISSGPSIS  420
KSNNIGLIDI KPLNVKECDN DTRKLSLIES PLGSFSVSNT DVYGSVFDLK NNNFSQGVDG  480
FKEQPLFERS LQSIPIHSES HHLLDAQVLE PCFDATMGIM KKQISCQNSI IDQTNVTGSA  540
SDLRNQVLGS ESAASGLLSE DLMFRWLQYG DVTSKDFGMD YIGYTGCNFS DYGSETLLPP  600
YVSKLDPEYL LDWA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-16185249163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610214}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021854411.10.0two-component response regulator ARR11
SwissprotQ9FXD61e-123ARR11_ARATH; Two-component response regulator ARR11
TrEMBLA0A0K9QRY80.0A0A0K9QRY8_SPIOL; Two-component response regulator
STRINGXP_010682390.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-107response regulator 11
Publications ? help Back to Top
  1. Zwack PJ, et al.
    Cytokinin Response Factor 6 Represses Cytokinin-Associated Genes during Oxidative Stress.
    Plant Physiol., 2016. 172(2): p. 1249-1258
    [PMID:27550996]
  2. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]