PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_146430_eotc.t1

Common Name

SOVF_146430

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

MYB_related

Protein Properties

Length: 329aa MW: 36559.3 Da PI: 9.009

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_146430_eotc.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43	1.1e-13	63	107	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky Sp_146430_eotc.t1 63 RENWTEQEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 107 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.17E-16	57	113	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.95	58	112	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.9E-7	61	113	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.9E-18	61	110	IPR006447	Myb domain, plants
SMART	SM00717	6.0E-11	62	110	IPR001005	SANT/Myb domain
Pfam	PF00249	3.2E-11	63	107	IPR001005	SANT/Myb domain
CDD	cd00167	1.68E-8	65	108	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009651	Biological Process	response to salt stress
GO:0009723	Biological Process	response to ethylene
GO:0009733	Biological Process	response to auxin
GO:0009737	Biological Process	response to abscisic acid
GO:0009739	Biological Process	response to gibberellin
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0046686	Biological Process	response to cadmium ion
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MVSVNPNPLQ PQGYNLEFNS DMPLTGVNSL PPVNSPVSSG YVVPATEDHC KKVRKPYTIT 60 KSRENWTEQE HDKFLEALQL FDRDWKKIEA FIGSKTVIQI RSHAQKYFLK VQKNGSNERV 120 PPPRPKRKAA HPYPQKASKI ASTTSQSTGQ YQESPVCALE PGYVYHHDPS SVLTNQSGSG 180 STSPWTFGSM PVVNSANMRR DDAALAMSMT PTGCSSSSNE SGSTWPTVGT MDQKHTKAVP 240 DFAQVYSFIG SVFDPNARDH LQRLKMMDPI NVETVLLLMK NLSVNLLSPE FEEYRKLFSS 300 YDVESGKTRS CSHLLPAPNN SKTVIPAVY

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00423	DAP	Transfer from AT4G01280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ752586	1e-51	FJ752586.1 Beta vulgaris clone BAC SBI-153H13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021850430.1	0.0	protein REVEILLE 5 isoform X1
Swissprot	C0SVG5	6e-97	RVE5_ARATH; Protein REVEILLE 5
TrEMBL	A0A0K9QSI3	0.0	A0A0K9QSI3_SPIOL; Uncharacterized protein
STRING	XP_010669883.1	1e-170	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01280.1	3e-72	MYB_related family protein

Publications ? help Back to Top
Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]