PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_146300_qsgq.t1
Common NameSOVF_146300
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family B3
Protein Properties Length: 480aa    MW: 53753.5 Da    PI: 5.3159
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_146300_qsgq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.31.8e-15137226198
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        f+k +++s+v+   +l lpkkf+++h  +  ++  ++l de g++ + k+ + k +    l++GWk+F  a++L  gD++vF+l+  ++f  
  Sp_146300_qsgq.t1 137 FVKLMLKSHVSGGFWLGLPKKFCDQHLPI--CDSIVVLVDEAGNESRTKYLVAKAG----LSGGWKGFSVAHDLLPGDTLVFQLITPTKF-- 220
                        89************************644..6778***************666666....***********************9986777.. PP

                        EEEEE- CS
                 B3  93 vvkvfr 98 
                        ++ ++r
  Sp_146300_qsgq.t1 221 KIYIVR 226
                        666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.4E-18131227IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-21132226IPR015300DNA-binding pseudobarrel domain
CDDcd100176.29E-24135226No hitNo description
SMARTSM010197.2E-21137228IPR003340B3 DNA binding domain
PROSITE profilePS5086311.448137228IPR003340B3 DNA binding domain
PfamPF023621.6E-13137226IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
KREKTVISKK DMKMALVAKR ISMLQDDHED EVHPVLCLEN PVQCESTKLL KDISDDTDTL  60
SEDVVLSNLS KNRTQVGSHK RARVVSDDES SEDKELVVWA PLQKKGSQRM DPLCDKPSSM  120
KRAEEVQANL PAEYPSFVKL MLKSHVSGGF WLGLPKKFCD QHLPICDSIV VLVDEAGNES  180
RTKYLVAKAG LSGGWKGFSV AHDLLPGDTL VFQLITPTKF KIYIVREQTF CEVDGALGLL  240
TLDAGAGHQK SEVSNQKFLQ TEDDYIFTED LSRSNSDGEL GSEVLDGICF SDSDIKFEQV  300
KGFEDFHIVV DGLIIDSKFT ANTRKKYYEL CQSQSSFLHE NFLKGLNCNL VVGVISETIN  360
IADAIKSCKR GSSISHEDLQ TWEKTLKGSE FLGMKVDFLR VCINQLLGIA VESSTTNESN  420
KLKERITRRA LAGERMKKLE VKLTQLKQTM EKIDLEMDDE IKMANAWKQE GSIIMEIPAV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021861714.10.0B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBLA0A0K9QSK20.0A0A0K9QSK2_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010688081.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.17e-41B3 family protein