PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_146270_izds.t1
Common NameSOVF_146270
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ARR-B
Protein Properties Length: 595aa    MW: 65472.1 Da    PI: 4.8998
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_146270_izds.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.65.8e-28193246155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        kprl W+ eLH++Fv+av+qL G +kA Pk+il+lm+v+gLt+e+v+SHLQkYRl
  Sp_146270_izds.t1 193 KPRLFWSVELHQKFVDAVNQL-GLDKAFPKKILDLMDVEGLTREKVASHLQKYRL 246
                        79*******************.********************************8 PP
2Response_reg85.91.2e-28211291109
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        vl+vdD+ + ++l+ ++l+k +y +v+++ +++eal++lk+++  +D++++D+emp+mdG++ll+     e++lp+i+++a+++ + + + +
  Sp_146270_izds.t1  21 VLVVDDDTTCLKLMDTLLKKCQY-QVTTTNQAKEALRILKRNKnkFDIVITDVEMPDMDGIKLLQLVGL-EMNLPVIMLSAYSDTKRVMQGV 110
                        89*********************.***************877778*******************87755.569******************* PP

                        HTTESEEEESS--HHHHHH CS
       Response_reg  91 kaGakdflsKpfdpeelvk 109
                        + Ga d+l+Kp+ ++el +
  Sp_146270_izds.t1 111 RNGACDYLVKPVRIQELQN 129
                        ****************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363929.8E-1403582IPR017053Response regulator B-type, plant
SuperFamilySSF521721.71E-3617146IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.0E-4318163No hitNo description
SMARTSM004483.0E-3219131IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.43620135IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.5E-2521129IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.16E-2922134No hitNo description
PROSITE profilePS5129411.071190249IPR017930Myb domain
SuperFamilySSF466898.42E-19190250IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-29190251IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-22193246IPR006447Myb domain, plants
PfamPF002496.3E-7198245IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MCVRPRASLM EDDKFPTGLR VLVVDDDTTC LKLMDTLLKK CQYQVTTTNQ AKEALRILKR  60
NKNKFDIVIT DVEMPDMDGI KLLQLVGLEM NLPVIMLSAY SDTKRVMQGV RNGACDYLVK  120
PVRIQELQNI WQHVVRRNKQ QQQRPTAIVE SSNISGDDDN NNNNNNNNDD DEDEDDEGEE  180
SGHENEDQTT HRKPRLFWSV ELHQKFVDAV NQLGLDKAFP KKILDLMDVE GLTREKVASH  240
LQKYRLYLRK VNSGSNQQAG RSGAEDAHIG PLGGGYGIYR SLAGAGRFPD QSGGGGLLGR  300
FNTSSGISLR GLSSSPMLQT PQLSNSFNTL SKFGPLNTSL FQQMPPTTSM MINGTPTLNT  360
RDFGPSSNLT PNLLDPSSKT NWGTPVQPPT TQPLSTPRNL LPINVSNDGI VPVSNTQIQS  420
IQNDPIDVFC GFSSMGASKG NVQSQDCPSG FNSFNNLAQP QIWNNQRPDY VLNSCNFSNT  480
SSSVITSATP PTLGDNVRES NNNMMGFSPF SQLGGTCSQI QVQKSNSDST LKFDDNYLLD  540
DPKLLSGSNQ SNSESLEDIV GRFLKQQAAD VIVLVQGNGE TATGREDFGL DPYLM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-21189252164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). Involved in activating SHY2 during meristem growth and controls PIN expression via activation of SHY2 (PubMed:20605455). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:20605455}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021837672.10.0two-component response regulator ARR12-like
SwissprotP625981e-102ARR12_ARATH; Two-component response regulator ARR12
TrEMBLA0A0K9QUN40.0A0A0K9QUN4_SPIOL; Two-component response regulator
STRINGXP_010687814.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.18e-93response regulator 12
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Cortleven A, et al.
    A novel protective function for cytokinin in the light stress response is mediated by the Arabidopsis histidine kinase2 and Arabidopsis histidine kinase3 receptors.
    Plant Physiol., 2014. 164(3): p. 1470-83
    [PMID:24424319]
  3. Kim HJ,Kieber JJ,Schaller GE
    The rice F-box protein KISS ME DEADLY2 functions as a negative regulator of cytokinin signalling.
    Plant Signal Behav, 2013. 8(12): p. e26434
    [PMID:24675172]
  4. Choi SH, et al.
    Gene duplication of type-B ARR transcription factors systematically extends transcriptional regulatory structures in Arabidopsis.
    Sci Rep, 2014. 4: p. 7197
    [PMID:25425016]
  5. Jiang L, et al.
    Strigolactones spatially influence lateral root development through the cytokinin signaling network.
    J. Exp. Bot., 2016. 67(1): p. 379-89
    [PMID:26519957]
  6. Cortleven A, et al.
    Cytokinin Regulates the Etioplast-Chloroplast Transition through the Two-Component Signaling System and Activation of Chloroplast-Related Genes.
    Plant Physiol., 2016. 172(1): p. 464-78
    [PMID:27388681]
  7. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  8. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  9. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  10. Kobayashi K,Iwase A
    Simultaneous but spatially different regulation of non-photosynthetic callus formation and photosynthetic root development after shoot removal.
    Plant Signal Behav, 2017. 12(6): p. e1338999
    [PMID:28594268]
  11. Dai X, et al.
    ARR12 promotes de novo shoot regeneration in Arabidopsis thaliana via activation of WUSCHEL expression.
    J Integr Plant Biol, 2017. 59(10): p. 747-758
    [PMID:28681564]
  12. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  13. Yan Z, et al.
    Type B Response Regulators Act As Central Integrators in Transcriptional Control of the Auxin Biosynthesis Enzyme TAA1.
    Plant Physiol., 2017. 175(3): p. 1438-1454
    [PMID:28931628]
  14. Bustillo-Avendaño E, et al.
    Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
    Plant Physiol., 2018. 176(2): p. 1709-1727
    [PMID:29233938]