PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_145720_ajod.t1
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WOX
Protein Properties Length: 451aa    MW: 50913.9 Da    PI: 7.5419
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_145720_ajod.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.53.1e-203697157
                       TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       ++ R+++t+eq+++L +lF++  r+ps++++++++++l    +++ ++V++WFqN++a+e++
  Sp_145720_ajod.t1 36 KCGRWNPTAEQVKVLTDLFRSgLRTPSTDQIQKISNQLsfygKIESKNVFYWFQNHKARERQ 97
                       568*****************99**************************************97 PP
2Wus_type_Homeobox111.73.8e-363699265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++ RW+Pt+eQ+k+L++l++sGlrtP++++iq+i+++L+ yGkie+kNVfyWFQN+kaRerqk+
  Sp_145720_ajod.t1 36 KCGRWNPTAEQVKVLTDLFRSGLRTPSTDQIQKISNQLSFYGKIESKNVFYWFQNHKARERQKR 99
                       678***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.0463398IPR001356Homeobox domain
SMARTSM003893.2E-435102IPR001356Homeobox domain
PfamPF000462.4E-173797IPR001356Homeobox domain
SuperFamilySSF466895.13E-1138100IPR009057Homeodomain-like
CDDcd000862.87E-53999No hitNo description
Gene3DG3DSA:1.10.10.601.1E-73997IPR009057Homeodomain-like
PfamPF013981.5E-30154265IPR000555JAB1/MPN/MOV34 metalloenzyme domain
CDDcd080620156436No hitNo description
SMARTSM002322.7E-28157291IPR000555JAB1/MPN/MOV34 metalloenzyme domain
PfamPF130129.5E-36315426IPR024969Rpn11/EIF3F, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0045087Biological Processinnate immune response
GO:0000502Cellular Componentproteasome complex
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MEEGMSGFCI QTTQTARTRA ASYGSGGGGP PSSGTKCGRW NPTAEQVKVL TDLFRSGLRT  60
PSTDQIQKIS NQLSFYGKIE SKNVFYWFQN HKARERQKRR RVSKDHDDAP CFHLDDLLKP  120
HVPPTKXREA EVQRKEKESE MDVVKIQQIS SSKAIEKVVV HPLVLLSIVD HYNRVARDTK  180
KRVIGVLLGS TFKGTVDVTN SYAVPFEEDD KDPSIWFLDH NYHESMFSMF RRINAKEHVV  240
GWYSTGPKLR ENDLDVHRLF SDYVPNPVMV IIDVQPEELG IPTKAYYAVE EVKENATQKS  300
QKVFAHVPSE IAAHEVEEIG VEHLLRDVKD TTISTLATEV TGKLAALKGL DARLREIRGY  360
LELVIEGKLP LNHEILYHLQ DVFNLLPNLS VLELVKAFAV KTNDMMLVIY LSSLIRSVIA  420
LHNLINNKML NKEHEKSEDS KSIPVVAAAG G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5vfp_Z1e-121154438128526S proteasome non-ATPase regulatory subunit 7
5vfq_Z1e-121154438128526S proteasome non-ATPase regulatory subunit 7
5vfr_Z1e-121154438128526S proteasome non-ATPase regulatory subunit 7
5vfs_Z1e-121154438128526S proteasome non-ATPase regulatory subunit 7
5vft_Z1e-121154438128526S proteasome non-ATPase regulatory subunit 7
5vfu_Z1e-121154438128526S proteasome non-ATPase regulatory subunit 7
5vgz_Z1e-121154438128526S proteasome non-ATPase regulatory subunit 7
5vhf_Z1e-121154438128526S proteasome non-ATPase regulatory subunit 7
5vhh_Z1e-121154438128526S proteasome non-ATPase regulatory subunit 7
5vhi_Z1e-121154438128526S proteasome non-ATPase regulatory subunit 7
5vhs_Z1e-121154438128526S proteasome non-ATPase regulatory subunit 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197101KRRRV
Functional Description ? help Back to Top
Source Description
UniProtActs as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins (By similarity). Required for innate immunity. {ECO:0000250, ECO:0000269|PubMed:22577987}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021863308.10.026S proteasome non-ATPase regulatory subunit 7 homolog A-like
SwissprotO244120.0PSD7A_ARATH; 26S proteasome non-ATPase regulatory subunit 7 homolog A
TrEMBLA0A0K9RYG80.0A0A0K9RYG8_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010690004.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11260.13e-41WUSCHEL related homeobox 5
Publications ? help Back to Top
  1. Fu H, et al.
    Structure and functional analysis of the 26S proteasome subunits from plants.
    Mol. Biol. Rep., 1999. 26(1-2): p. 137-46
    [PMID:10363660]
  2. Yang P, et al.
    Purification of the Arabidopsis 26 S proteasome: biochemical and molecular analyses revealed the presence of multiple isoforms.
    J. Biol. Chem., 2004. 279(8): p. 6401-13
    [PMID:14623884]
  3. Huang W,Huang H
    A Novel Function of the 26S Proteasome in Repressing Class-1 KNOX Genes During Leaf Development.
    Plant Signal Behav, 2007. 2(1): p. 25-7
    [PMID:19704803]
  4. Book AJ, et al.
    Affinity purification of the Arabidopsis 26 S proteasome reveals a diverse array of plant proteolytic complexes.
    J. Biol. Chem., 2010. 285(33): p. 25554-69
    [PMID:20516081]
  5. Yao C,Wu Y,Nie H,Tang D
    RPN1a, a 26S proteasome subunit, is required for innate immunity in Arabidopsis.
    Plant J., 2012. 71(6): p. 1015-28
    [PMID:22577987]
  6. Silverblatt-Buser EW,Frick MA,Rabeler C,Kaplinsky NJ
    Genetic Interactions Between BOB1 and Multiple 26S Proteasome Subunits Suggest a Role for Proteostasis in Regulating Arabidopsis Development.
    G3 (Bethesda), 2018. 8(4): p. 1379-1390
    [PMID:29487187]
  7. Asano K, et al.
    Structure of cDNAs encoding human eukaryotic initiation factor 3 subunits. Possible roles in RNA binding and macromolecular assembly.
    J. Biol. Chem., 1997. 272(43): p. 27042-52
    [PMID:9341143]