PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_144330_pdzi.t1 | ||||||||
Common Name | SOVF_144330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | NAC | ||||||||
Protein Properties | Length: 278aa MW: 31873.3 Da PI: 9.8345 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.5 | 2.1e-52 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrF Ptdeel+v+yL++kv+g++++l ++i+e+d+yk++Pw Lp+++ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk + Sp_144330_pdzi.t1 14 LPPGFRFYPTDEELLVQYLCRKVAGHEFSL-QIIAEIDLYKFDPWILPSMAMFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKII 104 79***************************9.89***************7666799***********************************99 PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +g++vg+kk Lvfy g+apkg+kt+W+mheyrl Sp_144330_pdzi.t1 105 TT-QGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRL 139 99.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.54E-67 | 10 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.629 | 14 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-26 | 15 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MGVEDKDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAGHE FSLQIIAEID LYKFDPWILP 60 SMAMFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIITTQGRK VGIKKALVFY 120 VGKAPKGTKT NWIMHEYRLT EHNRKAGSSK LDDWVLCRIY KKNSSAAKPT VSLEHSTAET 180 SSSSSSHLDD VLESLPEIDH RSFALPRMNS FKNSNSNSNV AQQQQQHHXA LPRMNSFKNS 240 NSNSNSNVAQ QQQQQHQQQQ QQQQQQQQQH QQQQNPQS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021840466.1 | 1e-153 | NAC domain-containing protein 72-like | ||||
Swissprot | A0A3Q7HH64 | 1e-126 | JA2L_SOLLC; NAC domain-containing protein JA2L | ||||
TrEMBL | A0A0K9QV91 | 0.0 | A0A0K9QV91_SPIOL; Uncharacterized protein (Fragment) | ||||
STRING | XP_010675611.1 | 1e-144 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 1e-111 | NAC family protein |
Publications ? help Back to Top | |||
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