PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_142010_qasr.t1
Common NameSOVF_142010
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family G2-like
Protein Properties Length: 455aa    MW: 50268.1 Da    PI: 5.2839
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_142010_qasr.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.92e-32237291155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        k+r+rWtpeLHerF+eav++L G+ekAtPk +l++m+v+g+t++hvkSHLQkYRl
  Sp_142010_qasr.t1 237 KQRMRWTPELHERFIEAVKKLDGPEKATPKGVLKIMNVEGITIYHVKSHLQKYRL 291
                        79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.215234294IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-30235292IPR009057Homeodomain-like
SuperFamilySSF466891.79E-17235291IPR009057Homeodomain-like
TIGRFAMsTIGR015576.2E-26237292IPR006447Myb domain, plants
PfamPF002497.5E-9239290IPR001005SANT/Myb domain
PfamPF143791.4E-22327372IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MNLPGRKSLT ANDSSKVTTA YCHALPSVDF SCVETCQGSV SSESSYPFLK QSGKLRHPSG  60
PTDIFSSSCD KSAPSRSSMF CTNLYLSSSS SSEAQRQLGN LPFLPSPSAP RSTKTQLFLN  120
DDSISDSVCE QKHSEDTFKD FLNFSGSLSD GDFDDVTCGS DSLAFSEHLE LQLLSDELHL  180
AITDSAENPG MDEIYEVSPV TSRPGIPSTV QKNPQPVPPS INAISGNKTS ETGASHKQRM  240
RWTPELHERF IEAVKKLDGP EKATPKGVLK IMNVEGITIY HVKSHLQKYR LAKYIPEKKE  300
EKKTSSSEEK KTLSSTKESD SSKKGSINEA LRMQMEVQKQ LHEQLEVQRA LQVRIEEHAR  360
YLQKILEEQQ KAQTALVSTQ SLSSVTSEEE PEVEPCPKSP AKAAESNTDM LSTLSSKRTN  420
EVLEQQPCQK RPRLDDEAKP EPEPESEPPV VDISL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A9e-26237294259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B9e-26237294259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A9e-26237294259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C9e-26237294259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D9e-26237294259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F9e-26237294259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H9e-26237294259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J9e-26237294259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00354DAPTransfer from AT3G13040Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021834961.10.0myb family transcription factor PHL6
SwissprotQ949U21e-110PHL6_ARATH; Myb family transcription factor PHL6
TrEMBLA0A0K9QTS50.0A0A0K9QTS5_SPIOL; Uncharacterized protein
STRINGXP_010696145.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.25e-75G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]