PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_141550_dcsg.t1

Common Name

SOVF_141550

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

NAC

Protein Properties

Length: 387aa MW: 44248.9 Da PI: 6.6264

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_141550_dcsg.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.8	6e-55	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 +ppGfrFhPt+eelv++yL++kv ++++e+ ++ike+d+yk+ePwdL++ +k+ +++ewyfFs++dkky+tg+r+nrat++g+Wkatg+d Sp_141550_dcsg.t1 7 VPPGFRFHPTEEELVDYYLRRKVCSRRIEV-DIIKEIDLYKIEPWDLQELCKTgddDQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRD 97 69**************************.99**********953333233556***************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 k++++ k+ l+g++ktLvfykgrap+g+k+dW+mheyrle Sp_141550_dcsg.t1 98 KAIYC-KHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 *.8899**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-59	5	156	IPR003441	NAC domain
PROSITE profile	PS51005	58.594	7	156	IPR003441	NAC domain
Pfam	PF02365	5.9E-28	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MNSSTQVPPG FRFHPTEEEL VDYYLRRKVC SRRIEVDIIK EIDLYKIEPW DLQELCKTGD 60 DDQNEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI YCKHDLIGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETDEN GAPQEEGWAV CRVFKKRTPT TMRRMGGHES PCWYDDHVSF 180 MSDMDSPQQA TQSNNGGLNN YTCKKEFNNN HHHHQHQHQH LPFQIPQEHH HLIHLPLFEN 240 SKMLLPSPHS TGNFNNSGLI PFGIDMSLHS NPTMQQIVNN NNNSNNNNDN ISNTDNNNGS 300 GQDVLDQVTD WRVLDKFVAS QLSHEDVVAK LGHDNNNNNY SSSNVAPGIF PGATAPIVSN 360 LSDKVEDSIP EKASTPTSSN QIDVWKS

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MNSSTQVPPG FRFHPTEEEL VDYYLRRKVC SRRIEVDIIK EIDLYKIEPW DLQELCKTGD  60
DDQNEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI YCKHDLIGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETDEN GAPQEEGWAV CRVFKKRTPT TMRRMGGHES PCWYDDHVSF  180
MSDMDSPQQA TQSNNGGLNN YTCKKEFNNN HHHHQHQHQH LPFQIPQEHH HLIHLPLFEN  240
SKMLLPSPHS TGNFNNSGLI PFGIDMSLHS NPTMQQIVNN NNNSNNNNDN ISNTDNNNGS  300
GQDVLDQVTD WRVLDKFVAS QLSHEDVVAK LGHDNNNNNY SSSNVAPGIF PGATAPIVSN  360
LSDKVEDSIP EKASTPTSSN QIDVWKS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	7e-49	3	157	11	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021842207.1	0.0	NAC domain-containing protein 7-like
Swissprot	Q9FWX2	1e-130	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A0K9QW43	0.0	A0A0K9QW43_SPIOL; Uncharacterized protein
STRING	XP_010672023.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-113	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]